# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	4.64e-18		
1oniA	137	8.11e-16	d.79.1.1	87144
1x25A	128	8.18e-16	d.79.1.1	121619
1qahA	136	1.06e-15	d.79.1.1	96338
1jd1A	129	1.40e-15	d.79.1.1	62890
2b33A	140	1.58e-15	d.79.1.1	127765
2cvlA	124	2.15e-15	d.79.1.1	130871
1qd9A	124	3.13e-15	d.79.1.1	39758
2uykA	129	5.81e-15		
1qu9A	128	9.61e-15	d.79.1.1	39755
2ewcA	126	1.11e-13	d.79.1.1	132454
1pf5A	131	3.57e-13	d.79.1.1	94604
2ig8A	144	7.30e-12		
1dbfA	127	7.601	d.79.1.2	39761
2a2lA	145	12.87	d.110.9.1	126035
1iyoA	262	17.86	e.3.1.1	76970
1fj2A	232	47.13	c.69.1.14	34720
2qcuA	501	53.98		
1eejA	216	59.87	c.47.1.9,d.17.3.1	33057,38071
2i6cA	160	60.53	d.108.1.1	137095
1t3bA	211	61.36	c.47.1.9,d.17.3.1	106341,106342
1ithA	141	65.76	a.1.1.2	15623
2ezkA	99	66.07	a.4.1.2	16027
1bupA	386	66.32	c.55.1.1,c.55.1.1	33377,33378
2o5aA	125	68.60		
1zc6A	305	69.74	c.55.1.5,c.55.1.5	124888,124889
2i7pA	362	69.91		
1zynA	202	84.58	c.47.1.2,c.47.1.2	125838,125839
2d4wA	504	84.83		
2ra2A	64	85.42		
1c0pA	363	88.28	c.4.1.2,d.16.1.3	30647,37934
2rb6A	61	88.76		
1kay	381	89.76