# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	6.99e-21		
1qahA	136	2.81e-17	d.79.1.1	96338
1x25A	128	3.26e-17	d.79.1.1	121619
1oniA	137	3.92e-17	d.79.1.1	87144
1jd1A	129	9.94e-17	d.79.1.1	62890
2cvlA	124	1.17e-16	d.79.1.1	130871
2b33A	140	1.27e-16	d.79.1.1	127765
1qd9A	124	1.59e-16	d.79.1.1	39758
2uykA	129	3.80e-16		
1qu9A	128	4.78e-16	d.79.1.1	39755
2ewcA	126	3.48e-14	d.79.1.1	132454
1pf5A	131	6.09e-14	d.79.1.1	94604
2ig8A	144	7.73e-13		
1bupA	386	8.759	c.55.1.1,c.55.1.1	33377,33378
2zgyA	320	12.92		
2o5aA	125	16.46		
1t3bA	211	17.05	c.47.1.9,d.17.3.1	106341,106342
2dp3A	257	17.67		
2a8mA	420	18.08		
1kay	381	20.48		
2qxlA	658	22.47		
2a8jA	420	23.44		
3bofA	566	27.16		
2je6B	250	31.76		
1dkgD	383	32.41	c.55.1.1,c.55.1.1	33427,33428
1k8tA	510	33.77	e.41.1.1	68316
1eejA	216	36.80	c.47.1.9,d.17.3.1	33057,38071
1ba1	386	36.85		
1yyqA	374	38.47		
2b7oA	464	39.45	c.1.10.8	128047
2nn6B	249	43.68		
2bshA	125	44.18		
2p3rA	510	49.62	c.55.1.4,c.55.1.4	139471,139472
1iyoA	262	50.02	e.3.1.1	76970
2a8lA	420	52.34		
2tysB	397	52.39	c.79.1.1	35272
1tph1	247	53.67		
2po1B	277	53.95		
1kewA	361	56.54	c.2.1.2	68544
2fsjA	346	58.27	c.55.1.12,c.55.1.12	134025,134026
1mwmA	320	60.80	c.55.1.1,c.55.1.1	79580,79581
2pcsA	162	61.77		
1xqsA	280	63.71	a.118.1.21	122243
2aelA	374	64.00		
1fj2A	232	65.75	c.69.1.14	34720
3cnwA	148	66.93		
1wp1A	474	69.90	f.5.1.1	114778
2yztA	67	73.77		
1hw1A	239	79.69	a.4.5.6,a.78.1.1	16111,18441
1eikA	77	85.45	d.78.1.1	39751
2lhbA	149	86.31	a.1.1.2	15597
2a2lA	145	86.34	d.110.9.1	126035