# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.28e-20		
1x25A	128	3.86e-18	d.79.1.1	121619
1oniA	137	4.75e-18	d.79.1.1	87144
1qahA	136	5.64e-18	d.79.1.1	96338
1jd1A	129	9.10e-18	d.79.1.1	62890
2b33A	140	9.56e-18	d.79.1.1	127765
2cvlA	124	1.27e-17	d.79.1.1	130871
1qd9A	124	1.60e-17	d.79.1.1	39758
2uykA	129	4.22e-17		
1qu9A	128	8.89e-17	d.79.1.1	39755
2ewcA	126	1.78e-15	d.79.1.1	132454
1pf5A	131	3.10e-15	d.79.1.1	94604
2ig8A	144	1.38e-13		
2a2lA	145	6.304	d.110.9.1	126035
1dbfA	127	10.96	d.79.1.2	39761
1eejA	216	19.67	c.47.1.9,d.17.3.1	33057,38071
2i6cA	160	34.48	d.108.1.1	137095
1t3bA	211	35.12	c.47.1.9,d.17.3.1	106341,106342
2o5aA	125	36.00		
1iyoA	262	44.12	e.3.1.1	76970
1kay	381	44.26		
1bupA	386	49.90	c.55.1.1,c.55.1.1	33377,33378
2ra2A	64	51.04		
2yztA	67	54.01		
1zh1A	163	60.32		
2qf4A	172	60.99		
2e3zA	465	63.43		
2jn0A	61	63.74		
1c0pA	363	68.11	c.4.1.2,d.16.1.3	30647,37934
1tph1	247	71.03		
1fj2A	232	73.38	c.69.1.14	34720
2rb6A	61	75.30		
2qcuA	501	76.75		
3bduA	62	76.77		
1w97L	246	76.81	c.55.1.11,c.55.1.11	114406,114407
2ewsA	287	77.74		
1gyxA	76	80.23	d.80.1.1	76387
3cnwA	148	82.07		
2ezkA	99	86.31	a.4.1.2	16027