# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 1.69e-24 1x25A 128 3.87e-21 d.79.1.1 121619 1qahA 136 5.94e-21 d.79.1.1 96338 1oniA 137 6.11e-21 d.79.1.1 87144 1jd1A 129 1.12e-20 d.79.1.1 62890 2b33A 140 1.42e-20 d.79.1.1 127765 2cvlA 124 2.09e-20 d.79.1.1 130871 1qd9A 124 2.61e-20 d.79.1.1 39758 1qu9A 128 3.65e-20 d.79.1.1 39755 2uykA 129 6.86e-20 2ewcA 126 4.78e-18 d.79.1.1 132454 1pf5A 131 1.94e-17 d.79.1.1 94604 2ig8A 144 1.51e-15 1eejA 216 1.973 c.47.1.9,d.17.3.1 33057,38071 1dbfA 127 2.350 d.79.1.2 39761 2ra2A 64 4.082 1iyoA 262 4.871 e.3.1.1 76970 2a2lA 145 5.717 d.110.9.1 126035 1t3bA 211 5.951 c.47.1.9,d.17.3.1 106341,106342 1c0pA 363 6.963 c.4.1.2,d.16.1.3 30647,37934 1u0mA 382 8.797 c.95.1.2,c.95.1.2 107557,107558 1cf2O 337 9.196 c.2.1.3,d.81.1.1 29994,39909 1reqA 727 10.07 c.1.19.1,c.23.6.1 29620,31247 2axtC 473 10.35 2oseA 234 11.33 2hk0A 309 13.49 2i7pA 362 13.69 1q4gA 553 16.18 a.93.1.2,g.3.11.1 95789,95790 2rb6A 61 16.26 2aqwA 332 16.38 c.1.2.3 127184 1txnA 328 17.30 d.248.1.1 112779 1arbA 268 17.92 b.47.1.1 25766 2ewsA 287 18.39 2aaa 484 18.71 1f82A 424 19.68 d.92.1.7 40307 3c0bA 334 19.72 1auoA 218 19.87 c.69.1.14 34716 1hj9A 226 21.71 b.47.1.2 65845 1lrwA 600 22.31 b.70.1.1 91111 1w5fA 353 22.35 c.32.1.1,d.79.2.1 114247,114248 2nn6B 249 23.54 1up6A 416 23.66 c.2.1.5,d.162.1.2 107976,107977 1iysA 262 26.22 e.3.1.1 90723 2cfuA 658 26.65 2ahfA 377 27.80 2i7nA 360 29.99 2qxiA 224 31.92 1bupA 386 31.95 c.55.1.1,c.55.1.1 33377,33378 2c5aA 379 34.93 c.2.1.2 129894 2obwA 258 36.60 1poxA 585 37.10 c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 2o5aA 125 37.90 1fgxA 288 38.37 c.68.1.2 34508 180lA 164 40.19 d.2.1.3 36867 1jbjA 186 42.05 b.1.1.4,b.1.1.4 66482,66483 2izpA 303 42.40 a.250.1.1 137826 1vh0A 161 44.28 c.116.1.3 100626 2gxaA 274 44.42 1pjr 724 45.10 2o0uA 364 46.46 d.144.1.7 138868 3bo7A 201 47.45 2yztA 67 48.32 1o4yA 288 49.93 b.29.1.2 92473 1otkA 249 50.46 a.25.1.2 93521 2adbA 148 51.52 d.58.7.1 126581 1xviA 275 52.14 c.108.1.10 116088 2g3vA 208 53.91 1gypA 358 54.18 c.2.1.3,d.81.1.1 30004,39919 2v8hA 474 54.18 2rfiA 285 54.98 2j6vA 301 55.71 2b7kA 200 55.77 c.47.1.10 128042 1k8tA 510 57.06 e.41.1.1 68316 1fk9A 543 58.19 c.55.3.1,e.8.1.2 33607,43080 1mejA 223 58.85 c.65.1.1 79029 1xvhA 129 62.99 a.8.1.2,a.8.1.2 116084,116085 1b65A 375 63.16 d.154.1.1 42020 1or0B 528 63.90 1s6yA 450 64.49 c.2.1.5,d.162.1.2 105314,105315 1ah7 245 64.59 2pnwA 380 64.95 1yljA 263 64.95 3tmkA 216 66.26 c.37.1.1 31920 1iqaA 160 66.41 b.22.1.1 71274 1dkgD 383 67.45 c.55.1.1,c.55.1.1 33427,33428 2sak 121 69.02 2qf4A 172 69.51 1udcA 338 71.78 c.2.1.2 29785 1b7gO 340 72.09 c.2.1.3,d.81.1.1 29992,39907 2ho1A 252 72.88 1ntvA 152 73.93 b.55.1.2 86168 2e79A 108 74.02 1kewA 361 74.18 c.2.1.2 68544 2cb2A 318 74.55 d.58.4.17 130174 1l8aA 886 75.27 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1o0xA 262 76.20 d.127.1.1 80755 1t2aA 375 76.97 c.2.1.2 99078 2v27A 275 77.76 2bsaA 303 79.26 b.43.4.2,c.25.1.1 129078,129079 2v7bA 529 79.91 1c76A 136 82.09 d.15.5.1 37718 2nr5A 67 84.08 1eexB 224 85.54 c.51.3.1 33213 1djxB 624 87.76 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1vdkA 466 88.55 a.127.1.1 100561 1r29A 127 89.84 d.42.1.1 96856