# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	5.81e-22		
1x25A	128	1.97e-19	d.79.1.1	121619
1oniA	137	2.39e-19	d.79.1.1	87144
1qahA	136	3.38e-19	d.79.1.1	96338
1jd1A	129	5.18e-19	d.79.1.1	62890
2b33A	140	5.59e-19	d.79.1.1	127765
2cvlA	124	1.08e-18	d.79.1.1	130871
1qd9A	124	1.31e-18	d.79.1.1	39758
2uykA	129	2.94e-18		
1qu9A	128	6.11e-18	d.79.1.1	39755
2ewcA	126	8.47e-17	d.79.1.1	132454
1pf5A	131	3.93e-16	d.79.1.1	94604
2ig8A	144	1.52e-14		
1dbfA	127	10.34	d.79.1.2	39761
2a2lA	145	12.22	d.110.9.1	126035
1eejA	216	13.76	c.47.1.9,d.17.3.1	33057,38071
2ezkA	99	15.97	a.4.1.2	16027
1t3bA	211	23.34	c.47.1.9,d.17.3.1	106341,106342
2qcuA	501	36.61		
2ra2A	64	36.95		
2jn0A	61	37.50		
2o5aA	125	42.36		
2rb6A	61	45.33		
1iyoA	262	45.79	e.3.1.1	76970
2yztA	67	59.97		
1bupA	386	60.75	c.55.1.1,c.55.1.1	33377,33378
2bh9A	489	62.41		
3bduA	62	67.03		
1w97L	246	67.28	c.55.1.11,c.55.1.11	114406,114407
2pnwA	380	68.33		
2i6cA	160	72.33	d.108.1.1	137095
1x3cA	73	81.28	g.37.1.1	121660
1ndh	272	86.36