# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.65e-17		
1qahA	136	2.27e-14	d.79.1.1	96338
1oniA	137	2.31e-14	d.79.1.1	87144
1x25A	128	2.37e-14	d.79.1.1	121619
2b33A	140	5.38e-14	d.79.1.1	127765
1jd1A	129	6.52e-14	d.79.1.1	62890
2cvlA	124	1.32e-13	d.79.1.1	130871
1qd9A	124	1.79e-13	d.79.1.1	39758
2uykA	129	4.35e-13		
1qu9A	128	6.45e-13	d.79.1.1	39755
1pf5A	131	1.92e-11	d.79.1.1	94604
2ewcA	126	5.56e-11	d.79.1.1	132454
2ig8A	144	5.81e-11		
1eejA	216	10.78	c.47.1.9,d.17.3.1	33057,38071
2zgyA	320	14.39		
2ho1A	252	15.85		
1t3bA	211	20.60	c.47.1.9,d.17.3.1	106341,106342
2d4wA	504	26.90		
1yx0A	159	37.99	d.108.1.1	124168
1wp1A	474	38.93	f.5.1.1	114778
1fj2A	232	40.80	c.69.1.14	34720
1c0pA	363	41.83	c.4.1.2,d.16.1.3	30647,37934
2pl2A	217	42.09		
1zgkA	308	42.36		
2dp3A	257	44.34		
2dpmA	284	45.15	c.66.1.28	34246
1azsA	220	46.23	d.58.29.1	39416
1iyoA	262	46.54	e.3.1.1	76970
2qomA	285	53.45		
2p3rA	510	55.25	c.55.1.4,c.55.1.4	139471,139472
2fsjA	346	55.35	c.55.1.12,c.55.1.12	134025,134026
1bu6O	501	58.90	c.55.1.4,c.55.1.4	33499,33500
1e4fT	419	63.12	c.55.1.1,c.55.1.1	33453,33454
1auoA	218	63.52	c.69.1.14	34716
2zf5O	497	64.17		
1qbqA	333	70.88	a.118.6.1	19187
1xq6A	253	74.86	c.2.1.2	115829
1k7hA	476	75.57	c.76.1.1	72101
2g1iA	563	75.59		
3cnwA	148	81.41		
2po1B	277	86.18		
1npmA	225	88.99	b.47.1.2	26070