# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.86e-25		
1x25A	128	2.74e-21	d.79.1.1	121619
1oniA	137	3.06e-21	d.79.1.1	87144
1qahA	136	3.58e-21	d.79.1.1	96338
1jd1A	129	6.64e-21	d.79.1.1	62890
2b33A	140	1.18e-20	d.79.1.1	127765
2cvlA	124	3.03e-20	d.79.1.1	130871
1qd9A	124	4.01e-20	d.79.1.1	39758
2uykA	129	9.69e-20		
1qu9A	128	1.78e-19	d.79.1.1	39755
2ewcA	126	3.59e-17	d.79.1.1	132454
1pf5A	131	5.34e-17	d.79.1.1	94604
2ig8A	144	2.43e-15		
2pnwA	380	4.607		
1eejA	216	14.22	c.47.1.9,d.17.3.1	33057,38071
1fj2A	232	15.73	c.69.1.14	34720
1zgkA	308	16.40		
1thtA	305	18.16	c.69.1.13	34711
2g5dA	422	18.24		
2i6cA	160	24.15	d.108.1.1	137095
1auoA	218	25.54	c.69.1.14	34716
2dp3A	257	27.95		
1iyoA	262	34.38	e.3.1.1	76970
1gk1B	522	36.94		
2r6zA	258	42.59		
1bouB	302	44.14	c.56.6.1	33859
1k8tA	510	48.65	e.41.1.1	68316
2pidA	356	49.13		
2a8mA	420	50.02		
2owrA	218	50.18		
1u0mA	382	51.54	c.95.1.2,c.95.1.2	107557,107558
1sfjA	238	56.39	c.1.10.1	112075
2ge3A	170	57.10	d.108.1.1	135044
1ifqA	138	59.29	d.110.4.1	62350
1sesA	421	61.04	a.2.7.1,d.104.1.1	15710,40710
1t3bA	211	61.46	c.47.1.9,d.17.3.1	106341,106342
2de6A	392	62.50	b.33.1.2,d.129.3.3	131415,131416
2qcuA	501	64.65		
1xcbA	211	65.58	a.4.5.38,c.2.1.12	109552,109553
1dbfA	127	66.70	d.79.1.2	39761
2o5aA	125	70.42		
2ho1A	252	72.10		
2c78A	405	72.92	b.43.3.1,b.44.1.1,c.37.1.8	130037,130038,130039
1t4hA	290	76.02	d.144.1.7	106420
1sflA	238	77.45	c.1.10.1	112077
1wp1A	474	81.09	f.5.1.1	114778
2a31A	223	82.41	b.47.1.2	126068
1xvhA	129	82.54	a.8.1.2,a.8.1.2	116084,116085
2pl2A	217	83.95		
2e7fA	262	86.03		
1augA	215	86.56	c.56.4.1	33798
1oaoA	674	87.65	e.26.1.2	86744