# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 7.48e-22 1qahA 136 1.21e-16 d.79.1.1 96338 2cvlA 124 7.82e-16 d.79.1.1 130871 1x25A 128 1.13e-15 d.79.1.1 121619 1jd1A 129 1.45e-15 d.79.1.1 62890 1qd9A 124 1.78e-15 d.79.1.1 39758 1oniA 137 1.94e-15 d.79.1.1 87144 2b33A 140 3.42e-15 d.79.1.1 127765 2uykA 129 5.23e-14 1qu9A 128 8.17e-14 d.79.1.1 39755 1pf5A 131 2.43e-12 d.79.1.1 94604 2ig8A 144 4.73e-10 2ewcA 126 1.75e-07 d.79.1.1 132454 1eejA 216 0.7310 c.47.1.9,d.17.3.1 33057,38071 2h0aA 276 1.834 2p5iA 288 5.438 1dbqA 289 7.745 c.93.1.1 35666 2p0lA 288 12.83 3bblA 287 14.98 2qu7A 288 16.10 2af4C 333 18.70 c.77.1.5 126656 1vmiA 355 20.44 c.77.1.5 113678 2je6B 250 24.34 2nn6B 249 26.30 2g6tA 306 28.00 c.147.1.1 134717 1rz1A 161 28.05 b.45.1.2 98124 2r55A 231 28.68 2uubB 256 31.44 c.23.15.1 139932 2idrA 177 32.37 1ufyA 122 34.32 d.79.1.2 88489 1vpwA 340 34.71 a.35.1.5,c.93.1.1 17087,35680 1dhr 241 35.81 2il5A 171 36.42 2b2nA 344 36.66 c.37.1.19 127710 2fepA 289 37.25 3brqA 296 39.73 1qpzA 340 40.28 a.35.1.5,c.93.1.1 17097,35673 1konA 249 42.18 e.39.1.1 72823 1jfxA 217 42.27 c.1.8.8 62943 1su0B 159 42.35 d.224.1.2 106015 1zylA 328 42.75 2nn6E 305 42.77 1fpzA 212 44.77 c.45.1.1 59976 1vqoH 171 46.62 d.41.4.1 120369 1pg4A 652 46.92 e.23.1.1 88067 1amuA 563 48.22 e.23.1.1 43351 2gfgA 193 49.19 2dpmA 284 50.12 c.66.1.28 34246 1vpqA 273 52.16 c.1.32.1 113974 1jftA 340 52.83 a.35.1.5,c.93.1.1 66652,66653 2qg5A 294 53.12 1vhqA 232 54.05 c.23.16.2 100696 1iirA 415 54.77 c.87.1.5 62453 3clkA 290 57.17 1ej1A 190 60.29 d.86.1.1 40144 1dkgD 383 60.80 c.55.1.1,c.55.1.1 33427,33428 1jl3A 139 62.22 c.44.1.1 66826 2ax4A 198 62.52 1fn9A 365 65.43 d.196.1.1 59894 1v4sA 455 65.99 c.55.1.3,c.55.1.3 100309,100310 2j3wA 142 66.38 d.110.4.3 137981 2bhoA 130 67.17 1m4jA 142 73.10 d.109.1.2 78602 1pfoA 500 75.01 f.9.1.1 43826 2izrA 330 75.37 1cmxA 236 76.34 d.3.1.6 37130 1btl 263 77.28 1csnA 298 77.39 d.144.1.7 41664 1f7sA 139 77.88 d.109.1.2 40857 2nutC 196 79.58 2po1B 277 81.01 1iyoA 262 82.01 e.3.1.1 76970 2hiyA 183 82.11 1zpvA 91 86.61 d.58.18.7 125475 2qs8A 418 87.02 1wyzA 242 87.53 c.90.1.1 121471 1r7aA 504 87.89 b.71.1.1,c.1.8.1 97192,97193