# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.00e-21		
1qahA	136	8.42e-21	d.79.1.1	96338
1jd1A	129	9.09e-21	d.79.1.1	62890
1x25A	128	1.68e-20	d.79.1.1	121619
1qd9A	124	1.99e-20	d.79.1.1	39758
2cvlA	124	2.48e-20	d.79.1.1	130871
2uykA	129	4.17e-20		
1qu9A	128	5.50e-20	d.79.1.1	39755
2ig8A	144	1.03e-19		
1pf5A	131	1.19e-19	d.79.1.1	94604
2ewcA	126	2.76e-16	d.79.1.1	132454
1zc6A	305	4.074	c.55.1.5,c.55.1.5	124888,124889
2gmnA	274	19.06		
1qxyA	252	20.77	d.127.1.1	96565
1zl0A	311	26.40	c.8.10.1,c.23.16.7	125231,125232
1w36C	1122	27.78	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
3bxpA	277	28.49		
1p9eA	331	29.27	d.157.1.5	104088
1w5dA	462	29.95	e.3.1.3	120642
2p4zA	284	34.94		
2ohhA	404	35.59		
8abpA	306	35.73	c.93.1.1	35647
2p3rA	510	36.56	c.55.1.4,c.55.1.4	139471,139472
1jetA	517	37.02	c.94.1.1	35718
1dc1A	323	39.40	c.52.1.11	33321
2q8kA	401	39.53		
2r7hA	177	41.59		
2obwA	258	42.84		
1wy2A	351	49.09		
2aioA	269	49.13	d.157.1.1	126829
2c7yA	404	49.39		
1xnzA	264	51.26	d.127.1.1	115673
2jx0A	135	53.13		
1byrA	155	53.45	d.136.1.1	41450
3c6fA	153	54.37		
1k07A	263	57.07	d.157.1.1	77218
1l7mA	211	57.25	c.108.1.4	73664
1y1nA	291	58.36		
2fl4A	149	59.32	d.108.1.1	133706
1m3kA	392	61.29	c.95.1.1,c.95.1.1	78565,78566
1b5qA	472	61.91	c.3.1.2,d.16.1.5	30404,37968
2ux0A	143	65.61		
1ufyA	122	71.05	d.79.1.2	88489
1sjiA	350	71.19		
2hglA	136	71.32		
2elfA	370	72.88		
1qnaA	200	75.41	d.129.1.1,d.129.1.1	41226,41227
1mk4A	157	75.41	d.108.1.1	84979
2cygA	312	76.30	c.1.8.3	131025
2yzvA	303	80.63		
2h3gX	268	82.77		
2o7rA	338	82.88		
1fj2A	232	85.34	c.69.1.14	34720
1l9cA	389	86.09	c.3.1.2,d.16.1.3	77815,77816
1xesA	413	88.03