# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.29e-20		
1qahA	136	3.79e-20	d.79.1.1	96338
1jd1A	129	4.54e-20	d.79.1.1	62890
1x25A	128	8.47e-20	d.79.1.1	121619
1qd9A	124	1.03e-19	d.79.1.1	39758
2cvlA	124	1.28e-19	d.79.1.1	130871
2uykA	129	1.77e-19		
1qu9A	128	2.92e-19	d.79.1.1	39755
1pf5A	131	4.87e-19	d.79.1.1	94604
2ig8A	144	6.53e-19		
2ewcA	126	7.37e-16	d.79.1.1	132454
1zc6A	305	5.975	c.55.1.5,c.55.1.5	124888,124889
3bxpA	277	12.13		
2gmnA	274	22.65		
1qxyA	252	27.79	d.127.1.1	96565
2r7hA	177	30.51		
2p3rA	510	32.88	c.55.1.4,c.55.1.4	139471,139472
2q8kA	401	33.03		
1zl0A	311	35.79	c.8.10.1,c.23.16.7	125231,125232
2p4zA	284	35.98		
2fl4A	149	36.19	d.108.1.1	133706
2ohhA	404	39.61		
2c7yA	404	40.25		
1b5qA	472	42.20	c.3.1.2,d.16.1.5	30404,37968
1w36C	1122	44.64	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
8abpA	306	45.99	c.93.1.1	35647
2aioA	269	48.67	d.157.1.1	126829
1k07A	263	51.66	d.157.1.1	77218
1p9eA	331	55.27	d.157.1.5	104088
2ux0A	143	56.56		
1ufyA	122	57.65	d.79.1.2	88489
2yzvA	303	57.82		
3c6fA	153	61.90		
1w5dA	462	63.61	e.3.1.3	120642
1fj2A	232	63.73	c.69.1.14	34720
1xesA	413	64.69		
1dc1A	323	66.88	c.52.1.11	33321
1byrA	155	70.35	d.136.1.1	41450
2h00A	254	70.66	c.66.1.54	135925
1m3kA	392	71.48	c.95.1.1,c.95.1.1	78565,78566
2jx0A	135	72.38		
1f20A	435	73.77	b.43.4.1,c.25.1.4	64932,64933
1o7qA	289	73.94	c.68.1.9	92626
1jetA	517	77.05	c.94.1.1	35718
2hglA	136	81.92		
2h3gX	268	84.14		
1xfjA	261	89.74	d.194.1.2	109585