# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.35e-22		
1qahA	136	6.62e-21	d.79.1.1	96338
1jd1A	129	8.47e-21	d.79.1.1	62890
1x25A	128	1.49e-20	d.79.1.1	121619
1qd9A	124	1.91e-20	d.79.1.1	39758
2cvlA	124	1.95e-20	d.79.1.1	130871
2uykA	129	2.92e-20		
1qu9A	128	5.61e-20	d.79.1.1	39755
1pf5A	131	1.21e-19	d.79.1.1	94604
2ig8A	144	1.79e-19		
2ewcA	126	1.72e-16	d.79.1.1	132454
2ohhA	404	5.027		
2gmnA	274	7.799		
1qxyA	252	12.30	d.127.1.1	96565
2p4zA	284	14.61		
1zl0A	311	16.08	c.8.10.1,c.23.16.7	125231,125232
3bxpA	277	25.05		
8abpA	306	25.70	c.93.1.1	35647
1p9eA	331	25.71	d.157.1.5	104088
2q8kA	401	26.71		
2fl4A	149	27.60	d.108.1.1	133706
2qf4A	172	28.86		
2aioA	269	31.15	d.157.1.1	126829
1xnzA	264	31.48	d.127.1.1	115673
1jetA	517	32.71	c.94.1.1	35718
1k07A	263	34.15	d.157.1.1	77218
3bsoA	510	38.25		
1ogiA	303	39.82	b.43.4.2,c.25.1.1	92914,92915
1wy2A	351	40.84		
1xesA	413	41.23		
1zc6A	305	44.20	c.55.1.5,c.55.1.5	124888,124889
2h3gX	268	44.91		
1zh1A	163	45.50		
1y1nA	291	46.28		
1ufyA	122	47.46	d.79.1.2	88489
2p3rA	510	48.27	c.55.1.4,c.55.1.4	139471,139472
2i6cA	160	48.54	d.108.1.1	137095
1jjtA	228	48.67	d.157.1.1	63139
1w5dA	462	50.20	e.3.1.3	120642
2yv9A	291	52.77		
2obwA	258	55.59		
2ggcA	263	57.18	d.127.1.1	135127
1f20A	435	58.42	b.43.4.1,c.25.1.4	64932,64933
1e5dA	402	61.22	c.23.5.1,d.157.1.3	31208,42061
2elfA	370	61.76		
1wwjA	105	64.38		
1r2zA	274	65.72	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1yb0A	159	66.27	d.118.1.1	122865
2cfuA	658	66.39		
1tedA	393	67.64	c.95.1.2	106807
2o5aA	125	71.65		
1o0xA	262	72.52	d.127.1.1	80755
1vs1A	276	73.26		
1c24A	263	75.16	d.127.1.1	41148
1xfjA	261	77.05	d.194.1.2	109585
2h00A	254	77.59	c.66.1.54	135925
1vmeA	410	78.11	c.23.5.1,d.157.1.3	108893,108894
1a7tA	232	78.80	d.157.1.1	42041
1spxA	278	79.25	c.2.1.2	98958
1wn1A	356	79.56		
2pezA	179	82.02		
1l7mA	211	83.01	c.108.1.4	73664
1r5pA	108	83.25	c.47.1.15	97101
1vk3A	615	85.47	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
2c7yA	404	86.66		
1n55A	251	86.74	c.1.1.1	80007
1zbsA	291	88.98	c.55.1.5,c.55.1.5	124870,124871