# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.56e-21		
1jd1A	129	5.14e-21	d.79.1.1	62890
1qahA	136	6.31e-21	d.79.1.1	96338
1qd9A	124	1.23e-20	d.79.1.1	39758
1x25A	128	1.27e-20	d.79.1.1	121619
2cvlA	124	1.29e-20	d.79.1.1	130871
2uykA	129	2.64e-20		
1qu9A	128	3.88e-20	d.79.1.1	39755
2ig8A	144	7.38e-20		
1pf5A	131	1.40e-19	d.79.1.1	94604
2ewcA	126	1.21e-16	d.79.1.1	132454
1zc6A	305	3.732	c.55.1.5,c.55.1.5	124888,124889
1p9eA	331	11.92	d.157.1.5	104088
1w36C	1122	14.85	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2r7hA	177	16.60		
2obwA	258	16.74		
2gmnA	274	18.33		
3bxpA	277	19.10		
2fl4A	149	20.48	d.108.1.1	133706
2h3gX	268	25.31		
1ufyA	122	26.22	d.79.1.2	88489
2p4zA	284	26.87		
1qxyA	252	27.13	d.127.1.1	96565
1l7mA	211	28.53	c.108.1.4	73664
2aioA	269	30.13	d.157.1.1	126829
1n3lA	372	32.71	c.26.1.1	79966
1yb0A	159	39.13	d.118.1.1	122865
2i6cA	160	39.39	d.108.1.1	137095
8abpA	306	39.56	c.93.1.1	35647
2q8kA	401	44.59		
3c26A	266	45.62		
1r2zA	274	47.84	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1w5dA	462	54.89	e.3.1.3	120642
2cygA	312	56.26	c.1.8.3	131025
1zl0A	311	57.62	c.8.10.1,c.23.16.7	125231,125232
2h00A	254	61.21	c.66.1.54	135925
1k07A	263	62.93	d.157.1.1	77218
2ch5A	347	63.45	c.55.1.5,c.55.1.5	130453,130454
2jx0A	135	66.18		
1m3kA	392	66.99	c.95.1.1,c.95.1.1	78565,78566
1b5qA	472	67.07	c.3.1.2,d.16.1.5	30404,37968
1fj2A	232	67.50	c.69.1.14	34720
1e19A	314	67.97	c.73.1.1	34967
2p3rA	510	72.72	c.55.1.4,c.55.1.4	139471,139472
3b5eA	223	73.18		
2zf5O	497	73.34		
2o5aA	125	74.56		
1jjtA	228	75.36	d.157.1.1	63139
1dc1A	323	75.43	c.52.1.11	33321
1jetA	517	75.75	c.94.1.1	35718
2ohhA	404	78.47		
2fiaA	162	79.23	d.108.1.1	133514
2gcuA	245	81.69		
1qstA	160	85.21	d.108.1.1	40804
1o60A	292	87.38	c.1.10.4	92532
1ad1A	266	88.51	c.1.21.1	29668
1a9nB	96	88.77	d.58.7.1	39165