# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	5.21e-21		
1jd1A	129	1.22e-20	d.79.1.1	62890
1qahA	136	1.73e-20	d.79.1.1	96338
1qd9A	124	2.75e-20	d.79.1.1	39758
2cvlA	124	2.99e-20	d.79.1.1	130871
1x25A	128	3.12e-20	d.79.1.1	121619
2uykA	129	5.46e-20		
1qu9A	128	7.94e-20	d.79.1.1	39755
2ig8A	144	1.71e-19		
1pf5A	131	2.89e-19	d.79.1.1	94604
2ewcA	126	3.78e-16	d.79.1.1	132454
1zc6A	305	3.693	c.55.1.5,c.55.1.5	124888,124889
1qxyA	252	17.89	d.127.1.1	96565
2obwA	258	21.32		
1w36C	1122	23.20	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
1l7mA	211	23.20	c.108.1.4	73664
2q8kA	401	25.12		
1p9eA	331	25.60	d.157.1.5	104088
2gmnA	274	27.27		
2p4zA	284	32.41		
2yzvA	303	35.26		
2r7hA	177	35.84		
1ufyA	122	38.82	d.79.1.2	88489
1n3lA	372	39.49	c.26.1.1	79966
8abpA	306	40.94	c.93.1.1	35647
3bxpA	277	41.85		
1r2zA	274	42.39	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1w5dA	462	48.71	e.3.1.3	120642
1k07A	263	51.63	d.157.1.1	77218
1yb0A	159	52.95	d.118.1.1	122865
2aioA	269	58.82	d.157.1.1	126829
2cygA	312	59.39	c.1.8.3	131025
1b5qA	472	61.03	c.3.1.2,d.16.1.5	30404,37968
1zl0A	311	63.86	c.8.10.1,c.23.16.7	125231,125232
2ohhA	404	64.41		
2h3gX	268	66.49		
2p3rA	510	69.86	c.55.1.4,c.55.1.4	139471,139472
1q2zA	120	71.23	a.118.19.1	95656
1aisA	182	74.01	d.129.1.1,d.129.1.1	41288,41289
1v4vA	376	78.91	c.87.1.3	100313
1xnzA	264	79.06	d.127.1.1	115673
2o5aA	125	79.23		
2fozA	347	79.31		
1fj2A	232	81.61	c.69.1.14	34720
1o7qA	289	87.03	c.68.1.9	92626