# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.17e-21		
1jd1A	129	3.66e-21	d.79.1.1	62890
1qahA	136	4.82e-21	d.79.1.1	96338
1qd9A	124	7.50e-21	d.79.1.1	39758
2cvlA	124	8.14e-21	d.79.1.1	130871
1x25A	128	8.15e-21	d.79.1.1	121619
2uykA	129	1.66e-20		
1qu9A	128	2.65e-20	d.79.1.1	39755
2ig8A	144	5.54e-20		
1pf5A	131	1.25e-19	d.79.1.1	94604
2ewcA	126	1.49e-16	d.79.1.1	132454
1zc6A	305	2.774	c.55.1.5,c.55.1.5	124888,124889
2q8kA	401	16.49		
2r7hA	177	18.39		
1qxyA	252	19.40	d.127.1.1	96565
2obwA	258	22.98		
1p9eA	331	24.54	d.157.1.5	104088
2p4zA	284	27.84		
1l7mA	211	29.36	c.108.1.4	73664
2gmnA	274	31.35		
1ufyA	122	33.38	d.79.1.2	88489
1w36C	1122	33.52	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
8abpA	306	34.63	c.93.1.1	35647
2aioA	269	35.27	d.157.1.1	126829
3bxpA	277	37.37		
2yzvA	303	44.18		
1r2zA	274	46.06	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1n3lA	372	46.27	c.26.1.1	79966
1yb0A	159	48.94	d.118.1.1	122865
1b5qA	472	50.43	c.3.1.2,d.16.1.5	30404,37968
1zl0A	311	51.76	c.8.10.1,c.23.16.7	125231,125232
2fl4A	149	52.14	d.108.1.1	133706
1w5dA	462	52.66	e.3.1.3	120642
2ohhA	404	57.99		
1aisA	182	60.20	d.129.1.1,d.129.1.1	41288,41289
2jx0A	135	63.57		
2h3gX	268	63.76		
2cygA	312	64.31	c.1.8.3	131025
2p3rA	510	64.32	c.55.1.4,c.55.1.4	139471,139472
1fj2A	232	64.76	c.69.1.14	34720
1o7qA	289	66.03	c.68.1.9	92626
2i6cA	160	66.04	d.108.1.1	137095
2ux0A	143	67.95		
1a9nB	96	70.30	d.58.7.1	39165
1k07A	263	70.31	d.157.1.1	77218
1v4vA	376	70.34	c.87.1.3	100313
1dc1A	323	71.79	c.52.1.11	33321
2qm1A	326	72.03		
2o5aA	125	75.88		
2elfA	370	84.39		
2cxaA	256	85.75	d.108.1.6	130993
1qnaA	200	88.99	d.129.1.1,d.129.1.1	41226,41227