# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.22e-22		
1qahA	136	5.44e-21	d.79.1.1	96338
1x25A	128	9.51e-21	d.79.1.1	121619
1jd1A	129	1.09e-20	d.79.1.1	62890
1qd9A	124	1.61e-20	d.79.1.1	39758
2cvlA	124	2.78e-20	d.79.1.1	130871
2uykA	129	3.22e-20		
1qu9A	128	4.00e-20	d.79.1.1	39755
2ig8A	144	9.24e-20		
1pf5A	131	1.21e-19	d.79.1.1	94604
2ewcA	126	2.51e-16	d.79.1.1	132454
2p5yA	311	3.598		
2gmnA	274	8.570		
2p3rA	510	11.99	c.55.1.4,c.55.1.4	139471,139472
1p9eA	331	13.27	d.157.1.5	104088
8abpA	306	18.25	c.93.1.1	35647
1b5qA	472	25.87	c.3.1.2,d.16.1.5	30404,37968
1zbsA	291	28.15	c.55.1.5,c.55.1.5	124870,124871
2aioA	269	28.41	d.157.1.1	126829
1k07A	263	33.01	d.157.1.1	77218
2a7mA	250	34.45		
2r2dA	276	35.20		
1oz9A	150	36.62	d.92.1.15	93808
1rreA	200	40.84	d.14.1.10	97791
1auoA	218	46.76	c.69.1.14	34716
2cz2A	223	47.98		
2r7hA	177	48.39		
1o60A	292	48.93	c.1.10.4	92532
1zc6A	305	51.33	c.55.1.5,c.55.1.5	124888,124889
2e4uA	555	52.90		
1jetA	517	56.67	c.94.1.1	35718
2ebdA	309	56.81		
1cfzA	162	57.45	c.56.1.1	33754
2nqrA	411	59.13	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
2a9gA	418	59.69	d.126.1.4	126435
1bu6O	501	61.23	c.55.1.4,c.55.1.4	33499,33500
1spxA	278	61.72	c.2.1.2	98958
1l7mA	211	62.10	c.108.1.4	73664
2cmd	312	62.79		
1x3mA	415	63.32	c.55.1.2,c.55.1.2	121664,121665
1zhaA	267	66.84		
1qgoA	264	67.42	c.92.1.2	35596
2qxlA	658	68.20		
1pjrA	724	68.51	c.37.1.19,c.37.1.19	32391,32392
2qmcB	188	68.53		
1bupA	386	70.09	c.55.1.1,c.55.1.1	33377,33378
1af7A	274	70.13	a.58.1.1,c.66.1.8	17928,34203
2p4zA	284	70.45		
2zf5O	497	72.62		
1xfjA	261	73.69	d.194.1.2	109585
3bbyA	215	74.10		
2hnlA	225	74.82		
2ggsA	273	77.76		
1e6uA	321	79.77	c.2.1.2	29805
2cygA	312	82.02	c.1.8.3	131025
1ui0A	205	83.62	c.18.1.2	99411
2yzvA	303	83.65		
2g64A	140	86.07	d.96.1.2	134694
1lbkA	208	86.80	a.45.1.1,c.47.1.5	73809,73810