# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qahA	136	4.93e-22	d.79.1.1	96338
1jd1A	129	4.99e-22	d.79.1.1	62890
2otmA	154	5.38e-22		
1qd9A	124	7.98e-22	d.79.1.1	39758
1x25A	128	1.02e-21	d.79.1.1	121619
2cvlA	124	1.42e-21	d.79.1.1	130871
2uykA	129	2.46e-21		
1qu9A	128	4.14e-21	d.79.1.1	39755
1pf5A	131	7.56e-21	d.79.1.1	94604
2ig8A	144	9.03e-21		
2ewcA	126	3.34e-17	d.79.1.1	132454
1p9eA	331	7.158	d.157.1.5	104088
1zc6A	305	8.741	c.55.1.5,c.55.1.5	124888,124889
1w36C	1122	11.85	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2r7hA	177	19.68		
1l7mA	211	23.03	c.108.1.4	73664
2gmnA	274	24.29		
3bxpA	277	24.59		
1ufyA	122	27.20	d.79.1.2	88489
2ohhA	404	28.61		
1jetA	517	31.11	c.94.1.1	35718
2fl4A	149	31.65	d.108.1.1	133706
1zl0A	311	36.11	c.8.10.1,c.23.16.7	125231,125232
2p4zA	284	36.60		
2p3rA	510	38.42	c.55.1.4,c.55.1.4	139471,139472
2cygA	312	39.71	c.1.8.3	131025
2yzvA	303	45.37		
1l9cA	389	46.68	c.3.1.2,d.16.1.3	77815,77816
1o7qA	289	47.42	c.68.1.9	92626
2q8kA	401	47.69		
2qm1A	326	48.87		
8abpA	306	49.57	c.93.1.1	35647
1dc1A	323	50.41	c.52.1.11	33321
1oz9A	150	52.51	d.92.1.15	93808
1b5qA	472	56.04	c.3.1.2,d.16.1.5	30404,37968
2jx0A	135	57.00		
1jjtA	228	58.00	d.157.1.1	63139
2ux0A	143	59.12		
3c6fA	153	59.48		
2elfA	370	59.79		
2o5aA	125	62.18		
3c26A	266	63.38		
1zh1A	163	65.86		
1w5dA	462	68.27	e.3.1.3	120642
1yb0A	159	69.28	d.118.1.1	122865
2a7mA	250	70.02		
1qnaA	200	70.61	d.129.1.1,d.129.1.1	41226,41227
1qxyA	252	74.50	d.127.1.1	96565
2obwA	258	74.67		
2ch5A	347	74.84	c.55.1.5,c.55.1.5	130453,130454
2o7rA	338	75.81		
2e4uA	555	83.80		
2aioA	269	84.18	d.157.1.1	126829
1khvA	516	85.99	e.8.1.4	68627
1vs1A	276	86.42		
3bsoA	510	86.54		
1xesA	413	86.93		
2hglA	136	87.34		
1m7gA	211	89.33	c.37.1.4	78724
1n3lA	372	89.86	c.26.1.1	79966