# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 1.98e-25 1qahA 136 3.14e-24 d.79.1.1 96338 1jd1A 129 3.61e-24 d.79.1.1 62890 1qu9A 128 4.27e-24 d.79.1.1 39755 1qd9A 124 5.49e-24 d.79.1.1 39758 1x25A 128 7.09e-24 d.79.1.1 121619 2cvlA 124 1.03e-23 d.79.1.1 130871 2uykA 129 1.92e-23 2ig8A 144 8.13e-23 1pf5A 131 1.13e-22 d.79.1.1 94604 2ewcA 126 1.31e-18 d.79.1.1 132454 1zc6A 305 1.185 c.55.1.5,c.55.1.5 124888,124889 1e5dA 402 1.228 c.23.5.1,d.157.1.3 31208,42061 1pjrA 724 1.654 c.37.1.19,c.37.1.19 32391,32392 1pjr 724 2.207 2ql8A 143 4.095 1qxyA 252 6.008 d.127.1.1 96565 2qo3A 915 6.326 2yw2A 424 7.063 2cfuA 658 7.560 1qstA 160 9.194 d.108.1.1 40804 1y8qA 346 10.15 1v4vA 376 12.13 c.87.1.3 100313 2elfA 370 12.16 1vk2A 204 13.05 c.18.1.2 100845 1b65A 375 13.20 d.154.1.1 42020 2p02A 396 13.87 1auoA 218 14.48 c.69.1.14 34716 1p9eA 331 14.71 d.157.1.5 104088 1ufyA 122 15.27 d.79.1.2 88489 2i7pA 362 15.46 1l5aA 436 16.39 c.43.1.2,c.43.1.2 75923,75924 1xesA 413 18.19 2haiA 576 18.48 2q8kA 401 19.32 1bgpA 309 19.65 a.93.1.1 18690 2aioA 269 21.22 d.157.1.1 126829 2fozA 347 21.38 1khvA 516 23.86 e.8.1.4 68627 1l7mA 211 24.83 c.108.1.4 73664 2v7bA 529 26.17 2jx0A 135 27.15 1xk7A 408 27.24 c.123.1.1 122071 2i1mA 333 27.41 1or0B 528 27.89 2nutC 196 29.05 2ohhA 404 29.90 8abpA 306 30.00 c.93.1.1 35647 1zgdA 312 30.49 2qm1A 326 30.60 2r7hA 177 30.93 2obwA 258 31.10 1wn1A 356 31.97 1yixA 265 33.20 c.1.9.12 123371 1n9eA 787 33.45 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2bjoA 136 34.67 1x74A 360 35.15 c.123.1.1 121771 3bxpA 277 37.13 1gx5A 536 37.50 e.8.1.4 70682 1woqA 267 38.66 c.55.1.10,c.55.1.10 109462,109463 2gciA 360 39.18 c.123.1.1 134983 1xfjA 261 39.25 d.194.1.2 109585 2c9eA 327 39.37 1a7tA 232 39.87 d.157.1.1 42041 1j4aA 333 39.93 c.2.1.4,c.23.12.1 71502,71503 1q7eA 428 44.07 c.123.1.1 96035 1u69A 163 47.19 d.32.1.7 107699 1m3iA 471 47.33 f.9.1.1 91178 2a7mA 250 48.13 1j3nA 408 48.68 c.95.1.1,c.95.1.1 84074,84075 2jgqA 233 49.42 2v27A 275 52.56 1o7qA 289 53.05 c.68.1.9 92626 1r5tA 142 53.58 c.97.1.1 104812 1lf7A 182 53.59 b.60.1.1 73878 2vjqA 428 53.89 3bsoA 510 54.83 1oz9A 150 55.82 d.92.1.15 93808 1vs1A 276 56.21 1qwzA 235 57.59 b.100.1.1 96510 2qzuA 491 58.00 1jjtA 228 59.27 d.157.1.1 63139 2ivnA 330 59.37 1yb0A 159 59.45 d.118.1.1 122865 2rhmA 193 60.05 2ux0A 143 61.31 2yzvA 303 61.38 1dc1A 323 62.62 c.52.1.11 33321 1hbnC 248 62.77 d.58.31.1 60902 1svb 395 62.81 1qh5A 260 64.89 d.157.1.2 42057 1h4vB 421 65.15 c.51.1.1,d.104.1.1 60624,60625 2o5aA 125 65.25 2hglA 136 65.81 1xafA 246 66.53 d.194.1.2 109535 2c7yA 404 68.07 1dxyA 333 68.17 c.2.1.4,c.23.12.1 30094,31354 1n3lA 372 69.82 c.26.1.1 79966 2pvfA 334 69.94 3cetA 334 69.97 1chmA 401 70.10 c.55.2.1,d.127.1.1 33545,41142 1ub3A 220 71.73 c.1.10.1 88395 1hj9A 226 73.20 b.47.1.2 65845 1x9mA 698 73.47 c.55.3.5,e.8.1.1 114999,115000 2sakA 121 73.49 d.15.5.1 37711 1o0xA 262 73.62 d.127.1.1 80755 2p5yA 311 74.31 1fj2A 232 74.47 c.69.1.14 34720 1f20A 435 75.18 b.43.4.1,c.25.1.4 64932,64933 1xl7A 612 75.61 c.43.1.3,c.43.1.3 115438,115439 1jetA 517 76.60 c.94.1.1 35718 2fl4A 149 77.05 d.108.1.1 133706 2pocA 367 77.07 1svbA 395 77.12 b.1.18.4,f.10.1.1 21814,43827 2sak 121 77.66 1xdwA 331 78.26 2h00A 254 79.10 c.66.1.54 135925 1vr6A 350 79.36 c.1.10.4 120439 1qwdA 177 80.02 b.60.1.1 96471 3c26A 266 80.19 2gcuA 245 80.96 1w36C 1122 81.30 c.37.1.19,c.37.1.19,c.52.1.25 114125,114126,114127 1spxA 278 82.34 c.2.1.2 98958 1wxxA 382 82.96 b.122.1.9,c.66.1.51 121418,121419 2c46A 241 83.35 1y6xA 93 84.69 a.204.1.4 122676 1wwjA 105 85.26 1j96A 323 86.87 c.1.7.1 71616 1dbfA 127 87.27 d.79.1.2 39761 1moq 368 87.87 1ui0A 205 88.06 c.18.1.2 99411 2p8iA 117 89.44 d.58.55.1 139522 1xmxA 385 89.87 c.52.1.26 115568