# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jd1A	129	1.89e-20	d.79.1.1	62890
1qahA	136	2.06e-20	d.79.1.1	96338
2otmA	154	2.64e-20		
1qd9A	124	2.90e-20	d.79.1.1	39758
1x25A	128	3.61e-20	d.79.1.1	121619
2cvlA	124	4.89e-20	d.79.1.1	130871
2uykA	129	7.74e-20		
1qu9A	128	1.39e-19	d.79.1.1	39755
2ig8A	144	2.12e-19		
1pf5A	131	2.85e-19	d.79.1.1	94604
2ewcA	126	1.04e-15	d.79.1.1	132454
1zc6A	305	8.516	c.55.1.5,c.55.1.5	124888,124889
2ohhA	404	20.33		
1w36C	1122	22.69	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
1zl0A	311	22.86	c.8.10.1,c.23.16.7	125231,125232
1l7mA	211	24.48	c.108.1.4	73664
2gmnA	274	25.73		
1ufyA	122	28.15	d.79.1.2	88489
1p9eA	331	28.72	d.157.1.5	104088
2p3rA	510	31.70	c.55.1.4,c.55.1.4	139471,139472
2q8kA	401	33.06		
2cygA	312	34.89	c.1.8.3	131025
2r7hA	177	37.99		
2p4zA	284	43.38		
1o7qA	289	43.53	c.68.1.9	92626
3bxpA	277	46.94		
1vs1A	276	49.08		
1qnaA	200	52.15	d.129.1.1,d.129.1.1	41226,41227
8abpA	306	53.19	c.93.1.1	35647
1dc1A	323	57.20	c.52.1.11	33321
2qm1A	326	59.27		
1b5qA	472	61.39	c.3.1.2,d.16.1.5	30404,37968
1jetA	517	61.42	c.94.1.1	35718
1wr8A	231	62.22	c.108.1.10	114836
2yzvA	303	62.99		
2elfA	370	63.62		
1qxyA	252	64.84	d.127.1.1	96565
2jx0A	135	68.92		
1m7gA	211	69.33	c.37.1.4	78724
1yb0A	159	69.92	d.118.1.1	122865
1l9cA	389	70.71	c.3.1.2,d.16.1.3	77815,77816
1jjtA	228	72.13	d.157.1.1	63139
1xdzA	240	72.39	c.66.1.20	115196
2o5aA	125	74.86		
1khvA	516	76.61	e.8.1.4	68627
2ux0A	143	76.95		
1aisA	182	77.22	d.129.1.1,d.129.1.1	41288,41289
1xfjA	261	78.45	d.194.1.2	109585
1auoA	218	79.40	c.69.1.14	34716
3c26A	266	80.96		
2ax4A	198	82.17		
2obwA	258	83.12		
1mzhA	225	83.22	c.1.10.1	79698
3bsoA	510	85.38		
2fozA	347	86.84		
2c7yA	404	87.95		
1oz9A	150	88.44	d.92.1.15	93808
1w5dA	462	88.63	e.3.1.3	120642
1r5pA	108	88.67	c.47.1.15	97101
1fj2A	232	88.67	c.69.1.14	34720