# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.20e-24		
1qahA	136	3.29e-24	d.79.1.1	96338
1jd1A	129	3.74e-24	d.79.1.1	62890
1x25A	128	6.96e-24	d.79.1.1	121619
1qd9A	124	7.57e-24	d.79.1.1	39758
2cvlA	124	1.12e-23	d.79.1.1	130871
2uykA	129	1.54e-23		
1qu9A	128	3.16e-23	d.79.1.1	39755
2ig8A	144	4.23e-23		
1pf5A	131	8.36e-23	d.79.1.1	94604
2ewcA	126	4.12e-19	d.79.1.1	132454
1zc6A	305	3.960	c.55.1.5,c.55.1.5	124888,124889
3bxpA	277	6.691		
2aioA	269	18.34	d.157.1.1	126829
1w36C	1122	21.34	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2gmnA	274	22.00		
1qxyA	252	26.91	d.127.1.1	96565
2p4zA	284	28.30		
1p9eA	331	28.98	d.157.1.5	104088
1yb0A	159	30.66	d.118.1.1	122865
2r7hA	177	32.64		
2q8kA	401	33.20		
2yzvA	303	33.47		
2ohhA	404	34.93		
1zl0A	311	35.62	c.8.10.1,c.23.16.7	125231,125232
1b5qA	472	38.85	c.3.1.2,d.16.1.5	30404,37968
2fl4A	149	46.67	d.108.1.1	133706
2cygA	312	46.99	c.1.8.3	131025
1k07A	263	47.32	d.157.1.1	77218
8abpA	306	47.33	c.93.1.1	35647
2elfA	370	52.39		
2jx0A	135	54.52		
1ufyA	122	58.55	d.79.1.2	88489
2h00A	254	59.60	c.66.1.54	135925
2dlwA	113	59.76		
1jetA	517	60.84	c.94.1.1	35718
1xesA	413	62.42		
1q2zA	120	71.28	a.118.19.1	95656
1f20A	435	72.72	b.43.4.1,c.25.1.4	64932,64933
3c26A	266	73.77		
2e4uA	555	74.08		
2p3rA	510	76.12	c.55.1.4,c.55.1.4	139471,139472
1o7qA	289	76.31	c.68.1.9	92626
2cxiA	348	76.97		
1r2zA	274	78.29	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
1xfjA	261	78.48	d.194.1.2	109585
2c7yA	404	79.26		
2o7rA	338	79.38		
2q2rA	373	79.62		
1dc1A	323	82.16	c.52.1.11	33321
3c6fA	153	82.32		
2fiaA	162	82.78	d.108.1.1	133514
2obwA	258	83.12		
2ux0A	143	83.86		
1cuk	203	84.58		
1w5dA	462	84.72	e.3.1.3	120642
2cxaA	256	85.15	d.108.1.6	130993
2hglA	136	88.30