# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	5.38e-23		
1qahA	136	3.35e-22	d.79.1.1	96338
1jd1A	129	3.96e-22	d.79.1.1	62890
1x25A	128	4.90e-22	d.79.1.1	121619
1qd9A	124	5.99e-22	d.79.1.1	39758
2cvlA	124	9.89e-22	d.79.1.1	130871
2uykA	129	1.83e-21		
1qu9A	128	2.64e-21	d.79.1.1	39755
2ig8A	144	4.66e-21		
1pf5A	131	6.89e-21	d.79.1.1	94604
2ewcA	126	1.01e-17	d.79.1.1	132454
1zc6A	305	12.88	c.55.1.5,c.55.1.5	124888,124889
2gmnA	274	13.56		
1qxyA	252	21.38	d.127.1.1	96565
2ohhA	404	28.58		
3bxpA	277	28.72		
1p9eA	331	30.96	d.157.1.5	104088
2p4zA	284	34.08		
2cygA	312	36.29	c.1.8.3	131025
1zl0A	311	39.78	c.8.10.1,c.23.16.7	125231,125232
2aioA	269	40.61	d.157.1.1	126829
2q8kA	401	41.76		
1r2zA	274	43.68	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2yzvA	303	44.62		
1ufyA	122	46.54	d.79.1.2	88489
8abpA	306	47.01	c.93.1.1	35647
1w5dA	462	51.02	e.3.1.3	120642
1aisA	182	51.32	d.129.1.1,d.129.1.1	41288,41289
1yb0A	159	53.15	d.118.1.1	122865
2p3rA	510	54.57	c.55.1.4,c.55.1.4	139471,139472
1k07A	263	56.30	d.157.1.1	77218
1jetA	517	59.13	c.94.1.1	35718
2jgqA	233	60.55		
2jx0A	135	61.35		
3c6fA	153	63.40		
2qf4A	172	65.41		
2elfA	370	71.44		
1wwjA	105	77.21		
2o7rA	338	83.54		
1xesA	413	84.09		
1xnzA	264	86.40	d.127.1.1	115673
1jjtA	228	86.87	d.157.1.1	63139
1cznA	169	89.78	c.23.5.1	31181