# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	3.36e-21		
1jd1A	129	1.28e-20	d.79.1.1	62890
1qahA	136	1.39e-20	d.79.1.1	96338
1x25A	128	2.68e-20	d.79.1.1	121619
1qd9A	124	2.74e-20	d.79.1.1	39758
2cvlA	124	4.92e-20	d.79.1.1	130871
2uykA	129	7.49e-20		
1qu9A	128	8.37e-20	d.79.1.1	39755
2ig8A	144	1.34e-19		
1pf5A	131	1.94e-19	d.79.1.1	94604
2ewcA	126	1.96e-16	d.79.1.1	132454
1qxyA	252	11.03	d.127.1.1	96565
2gmnA	274	15.70		
2ohhA	404	16.61		
3bxpA	277	19.02		
1zc6A	305	19.61	c.55.1.5,c.55.1.5	124888,124889
2q8kA	401	23.77		
2p4zA	284	25.11		
1w36C	1122	29.18	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2aioA	269	29.41	d.157.1.1	126829
2obwA	258	35.13		
1jetA	517	46.23	c.94.1.1	35718
1xnzA	264	50.20	d.127.1.1	115673
1zl0A	311	52.79	c.8.10.1,c.23.16.7	125231,125232
8abpA	306	52.90	c.93.1.1	35647
1p9eA	331	55.88	d.157.1.5	104088
2a7mA	250	58.51		
2p3rA	510	61.16	c.55.1.4,c.55.1.4	139471,139472
1jjtA	228	61.75	d.157.1.1	63139
3c6fA	153	62.16		
1wy2A	351	63.21		
2r7hA	177	63.72		
2c7yA	404	64.86		
2fl4A	149	65.68	d.108.1.1	133706
2jgqA	233	67.45		
1yb0A	159	67.75	d.118.1.1	122865
1k07A	263	68.16	d.157.1.1	77218
1b5qA	472	71.79	c.3.1.2,d.16.1.5	30404,37968
2o7rA	338	75.19		
1r2zA	274	78.38	a.156.1.2,b.113.1.1,g.39.1.8	96892,96893,96894
2ggcA	263	78.82	d.127.1.1	135127
2yzvA	303	79.50		
1y1nA	291	81.19		
2cygA	312	83.66	c.1.8.3	131025
1oz9A	150	87.21	d.92.1.15	93808
2hglA	136	87.46		
1e5dA	402	88.72	c.23.5.1,d.157.1.3	31208,42061
2qf4A	172	89.57