# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.34e-17		
1qahA	136	1.50e-16	d.79.1.1	96338
1jd1A	129	3.25e-16	d.79.1.1	62890
1x25A	128	3.53e-16	d.79.1.1	121619
2ig8A	144	4.00e-16		
1qd9A	124	7.37e-16	d.79.1.1	39758
2cvlA	124	8.56e-16	d.79.1.1	130871
2uykA	129	9.26e-16		
1qu9A	128	2.88e-15	d.79.1.1	39755
1pf5A	131	3.01e-15	d.79.1.1	94604
2ewcA	126	7.87e-13	d.79.1.1	132454
1p9eA	331	7.935	d.157.1.5	104088
2qm1A	326	14.16		
2vefA	314	18.06		
2p5yA	311	22.93		
1v4vA	376	27.56	c.87.1.3	100313
2p3rA	510	30.59	c.55.1.4,c.55.1.4	139471,139472
2basA	431	34.52	c.1.33.1,d.110.6.2	128244,128245
2a7mA	250	36.13		
2r7hA	177	36.79		
2r2dA	276	38.64		
2r6oA	294	39.61		
1o60A	292	43.98	c.1.10.4	92532
2zf5O	497	44.52		
1zc6A	305	47.52	c.55.1.5,c.55.1.5	124888,124889
8abpA	306	52.83	c.93.1.1	35647
2dxnA	274	56.08		
2q2rA	373	56.22		
1yycA	174	56.79		
1jjtA	228	60.87	d.157.1.1	63139
2c2nA	339	62.82		
2ggsA	273	63.18		
2itmA	484	65.82		
1rreA	200	67.02	d.14.1.10	97791
2jx0A	135	67.21		
3b5eA	223	67.91		
1r59O	505	68.43	c.55.1.4,c.55.1.4	111697,111698
1zhaA	267	74.07		
1gsjA	258	75.62	c.73.1.2	70397
1vr6A	350	77.31	c.1.10.4	120439
2akoA	251	77.46	c.73.1.3	126923
1y5eA	169	77.57	c.57.1.1	122632
1ju3A	583	77.74	b.18.1.13,c.69.1.21	67300,67301
2gmnA	274	78.05		
2ch5A	347	82.14	c.55.1.5,c.55.1.5	130453,130454
1dqzA	280	83.38	c.69.1.3	34638
1ukzA	203	84.63	c.37.1.1	31840
2d4wA	504	84.98		
2e4uA	555	87.04		
1bu6O	501	87.82	c.55.1.4,c.55.1.4	33499,33500
2q1sA	377	89.59