# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	3.41e-22		
1qahA	136	4.65e-20	d.79.1.1	96338
1jd1A	129	7.74e-20	d.79.1.1	62890
1x25A	128	1.65e-19	d.79.1.1	121619
1qd9A	124	2.12e-19	d.79.1.1	39758
2cvlA	124	2.96e-19	d.79.1.1	130871
2uykA	129	4.32e-19		
2ig8A	144	4.57e-19		
1qu9A	128	5.29e-19	d.79.1.1	39755
1pf5A	131	1.99e-18	d.79.1.1	94604
2ewcA	126	7.46e-16	d.79.1.1	132454
1zc6A	305	0.5893	c.55.1.5,c.55.1.5	124888,124889
1p9eA	331	1.149	d.157.1.5	104088
2qm1A	326	3.484		
2ch5A	347	4.155	c.55.1.5,c.55.1.5	130453,130454
2gmnA	274	8.510		
2r2dA	276	12.07		
1w36C	1122	12.78	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2aioA	269	14.56	d.157.1.1	126829
1o60A	292	15.19	c.1.10.4	92532
2r7hA	177	15.23		
2a7mA	250	18.02		
2o7rA	338	21.84		
1vk2A	204	22.31	c.18.1.2	100845
2q2rA	373	23.73		
2ge3A	170	24.36	d.108.1.1	135044
1ui0A	205	24.42	c.18.1.2	99411
1k07A	263	25.41	d.157.1.1	77218
1m3kA	392	25.96	c.95.1.1,c.95.1.1	78565,78566
2c7yA	404	26.46		
2p3rA	510	27.90	c.55.1.4,c.55.1.4	139471,139472
2fl4A	149	29.05	d.108.1.1	133706
3c26A	266	32.85		
1rq2A	382	34.41	c.32.1.1,d.79.2.1	105048,105049
1sesA	421	38.62	a.2.7.1,d.104.1.1	15710,40710
1v7wA	807	40.11	a.102.1.4,b.30.5.3	108411,108412
1zl0A	311	43.20	c.8.10.1,c.23.16.7	125231,125232
2p5yA	311	44.19		
1jjtA	228	44.54	d.157.1.1	63139
2ob3A	330	44.71		
1rreA	200	46.49	d.14.1.10	97791
1zhaA	267	50.49		
2i6cA	160	50.77	d.108.1.1	137095
1zbsA	291	51.93	c.55.1.5,c.55.1.5	124870,124871
1zgkA	308	52.26		
1m4tA	392	52.47	c.95.1.1,c.95.1.1	78617,78618
1pe1A	267	53.35	c.1.10.4	94591
2vefA	314	54.01		
2zf5O	497	55.12		
1pjrA	724	55.14	c.37.1.19,c.37.1.19	32391,32392
1vmeA	410	58.56	c.23.5.1,d.157.1.3	108893,108894
2is6A	680	60.57		
2cygA	312	61.62	c.1.8.3	131025
1wl4A	397	64.66		
2i7xA	717	67.16		
2dxnA	274	69.35		
1ufyA	122	71.58	d.79.1.2	88489
1r3sA	367	72.01	c.1.22.1	96963
2pa8D	265	72.75		
2ohhA	404	74.32		
1v8dA	235	74.34	c.140.1.1	108425
1xesA	413	74.74		
1v84A	253	74.95	c.68.1.7	108419
1wdkC	390	76.53	c.95.1.1,c.95.1.1	109258,109259
2qdsA	227	80.96		
3b5eA	223	81.76		
1afwA	393	82.35	c.95.1.1,c.95.1.1	35900,35901
2r48A	106	86.45		
1tedA	393	86.97	c.95.1.2	106807
2q1sA	377	88.73		
1pjr	724	89.15		
1vr6A	350	89.33	c.1.10.4	120439