# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	9.09e-17		
1qahA	136	7.48e-16	d.79.1.1	96338
1x25A	128	1.03e-15	d.79.1.1	121619
1jd1A	129	1.29e-15	d.79.1.1	62890
1qd9A	124	2.71e-15	d.79.1.1	39758
2cvlA	124	6.82e-15	d.79.1.1	130871
1pf5A	131	1.80e-14	d.79.1.1	94604
2uykA	129	2.13e-14		
1qu9A	128	3.83e-14	d.79.1.1	39755
2ig8A	144	2.71e-12		
2ewcA	126	5.82e-10	d.79.1.1	132454
2h3gX	268	4.463		
1txjA	171	5.202	b.88.1.2	107424
1mk4A	157	5.374	d.108.1.1	84979
2d0oA	610	8.654	c.8.6.1,c.55.1.6,c.55.1.6	131075,131076,131077
3b5eA	223	11.07		
1dbfA	127	11.67	d.79.1.2	39761
1vraA	208	11.76		
8abpA	306	17.43	c.93.1.1	35647
1b8oA	284	21.23	c.56.2.1	33762
2db1A	118	22.95		
1q8rA	120	23.33	d.79.6.1	96225
2nwqA	272	23.51		
1vs1A	276	24.38		
2nutC	196	26.93		
8abp	306	29.70		
1xfjA	261	30.10	d.194.1.2	109585
2b9wA	424	31.80		
1su0B	159	33.90	d.224.1.2	106015
1v6tA	255	34.28	c.6.2.5	113550
1vk2A	204	36.44	c.18.1.2	100845
2euiA	153	36.74	d.108.1.1	132387
1tuhA	156	37.89	d.17.4.11	107345
2o4uX	334	38.65		
3c8lA	122	42.34		
1i4uA	181	43.54	b.60.1.1	61732
1dbqA	289	45.25	c.93.1.1	35666
2dpmA	284	46.12	c.66.1.28	34246
2h0aA	276	47.91		
1ejeA	192	48.05	b.45.1.2	25757
1wmqA	147	48.83	d.275.1.1	121068
2owrA	218	50.27		
3c6fA	153	50.28		
2c5qA	240	50.69		
2fnoA	248	53.62	a.45.1.1,c.47.1.5	133821,133822
1oj6A	151	54.23	a.1.1.2	93088
2a6pA	208	54.24		
2vglS	142	55.36		
2a9sA	171	57.82	c.51.5.1	126448
2bsnA	145	57.95		
1rkqA	282	58.13	c.108.1.10	97621
1b4pA	217	58.55	a.45.1.1,c.47.1.5	83158,83159
1iv3A	152	62.44	d.79.5.1	76828
3bblA	287	62.86		
1tif	78	62.88		
1ysjA	404	63.15	c.56.5.4,d.58.19.1	123975,123976
1jx4A	352	63.89	d.240.1.1,e.8.1.7	90378,90379
2p3rA	510	65.41	c.55.1.4,c.55.1.4	139471,139472
1dqaA	467	65.66	d.58.20.1,d.179.1.1	39364,42585
2h26A	291	68.28	b.1.1.2,d.19.1.1	135990,135991
1tifA	78	68.87	d.15.8.1	37836
1ew0A	130	71.05	d.110.3.2	40905
1lfpA	249	74.10	e.39.1.1	73885
1zc6A	305	74.58	c.55.1.5,c.55.1.5	124888,124889
2o3hA	285	74.70		
2hi6A	141	74.79	c.8.2.3	136523
2q0zX	339	75.37		
1hd7A	318	75.68	d.151.1.1	41780
2h8eA	120	78.64		
2jejA	358	79.25	d.240.1.1,e.8.1.7	138284,138285
2e5yA	133	79.38		
2qm1A	326	79.78		
2scpA	174	80.41	a.39.1.5	17256
2hzqA	174	81.57		
2ri7A	174	82.81		
1xxlA	239	83.55	c.66.1.41	116203
3blzA	128	84.02		
2ahrA	259	84.92	a.100.1.10,c.2.1.6	126775,126776
1cxqA	162	85.41	c.55.3.2	33621
2dc5A	231	85.55		
2e7fA	262	86.97		
3clkA	290	88.34		
2r2zA	93	88.94		
1wpuA	147	89.20	d.275.1.1	121151
1yz1A	174	89.22	b.88.1.2	124264