# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.52e-24		
2b33A	140	1.04e-21	d.79.1.1	127765
1jd1A	129	1.52e-21	d.79.1.1	62890
1oniA	137	1.66e-21	d.79.1.1	87144
1qd9A	124	1.83e-21	d.79.1.1	39758
1qahA	136	2.32e-21	d.79.1.1	96338
2cvlA	124	2.39e-21	d.79.1.1	130871
1x25A	128	3.53e-21	d.79.1.1	121619
1qu9A	128	1.52e-20	d.79.1.1	39755
2uykA	129	1.76e-20		
1pf5A	131	3.09e-20	d.79.1.1	94604
2ig8A	144	3.42e-20		
2ewcA	126	5.82e-17	d.79.1.1	132454
2ch5A	347	4.128	c.55.1.5,c.55.1.5	130453,130454
1zc6A	305	4.534	c.55.1.5,c.55.1.5	124888,124889
1zl0A	311	6.335	c.8.10.1,c.23.16.7	125231,125232
1zrsA	317	7.893	c.8.10.1,c.23.16.7	125556,125557
1glcG	501	8.868	c.55.1.4,c.55.1.4	33519,33520
1vs1A	276	10.72		
1zcoA	262	14.74		
1ly1A	181	17.53	c.37.1.1	74334
2aunA	317	18.97	c.8.10.1,c.23.16.7	127334,127335
1o60A	292	20.48	c.1.10.4	92532
1v30A	124	28.32	d.269.1.1	113496
1aisA	182	34.80	d.129.1.1,d.129.1.1	41288,41289
2ogxA	276	35.55		
2o95A	187	35.86		
1qnaA	200	36.34	d.129.1.1,d.129.1.1	41226,41227
1hkxA	147	36.73	d.17.4.7	83567
2egtA	132	39.97		
1mp9A	198	44.86	d.129.1.1,d.129.1.1	91385,91386
2jgqA	233	45.46		
1j3gA	187	45.78	d.118.1.1	77075
1aj2	282	47.65		
1qxyA	252	48.54	d.127.1.1	96565
1ad4A	266	50.82	c.1.21.1	29670
1aqb	183	52.53		
1lf7A	182	52.95	b.60.1.1	73878
2bmwA	304	55.77	b.43.4.2,c.25.1.1	128815,128816
1g8sA	230	55.95	c.66.1.3	90507
2aumA	317	56.30	c.8.10.1,c.23.16.7	127330,127331
2ebdA	309	57.43		
1xkqA	280	61.11	c.2.1.2	115417
2qkbA	154	62.49		
1dc1A	323	62.57	c.52.1.11	33321
1bu6O	501	67.47	c.55.1.4,c.55.1.4	33499,33500
1y1nA	291	68.88		
1ltqA	301	72.21	c.108.1.9,c.37.1.1	78208,78209
2ckwA	515	76.66		
2gu2A	312	77.35		
2b3hA	329	77.37		
1nf8A	207	77.87	c.33.1.3	85630
3c6fA	153	78.43		
1j77A	209	80.65	a.132.1.2	62674
2lisA	136	81.00	a.19.1.1	16405
1epaA	164	81.21	b.60.1.1	27128
1ogiA	303	83.74	b.43.4.2,c.25.1.1	92914,92915
1ad1A	266	88.56	c.1.21.1	29668
1i4uA	181	89.14	b.60.1.1	61732