# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	4.74e-23		
2b33A	140	5.98e-21	d.79.1.1	127765
1jd1A	129	1.02e-20	d.79.1.1	62890
1oniA	137	1.16e-20	d.79.1.1	87144
1qahA	136	1.31e-20	d.79.1.1	96338
2cvlA	124	1.66e-20	d.79.1.1	130871
1qd9A	124	1.69e-20	d.79.1.1	39758
1x25A	128	2.62e-20	d.79.1.1	121619
2uykA	129	8.61e-20		
1qu9A	128	1.00e-19	d.79.1.1	39755
1pf5A	131	1.59e-19	d.79.1.1	94604
2ig8A	144	1.75e-19		
2ewcA	126	1.90e-16	d.79.1.1	132454
1glcG	501	4.878	c.55.1.4,c.55.1.4	33519,33520
1zc6A	305	6.405	c.55.1.5,c.55.1.5	124888,124889
2ch5A	347	7.457	c.55.1.5,c.55.1.5	130453,130454
1zl0A	311	11.83	c.8.10.1,c.23.16.7	125231,125232
1zrsA	317	16.33	c.8.10.1,c.23.16.7	125556,125557
1vs1A	276	18.56		
1hkxA	147	19.80	d.17.4.7	83567
1v30A	124	22.55	d.269.1.1	113496
2egtA	132	24.99		
1aisA	182	28.06	d.129.1.1,d.129.1.1	41288,41289
1o60A	292	28.46	c.1.10.4	92532
1bu6O	501	29.76	c.55.1.4,c.55.1.4	33499,33500
1zcoA	262	34.10		
2ogxA	276	37.70		
1yuwA	554	39.23	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2qkbA	154	39.47		
2bmwA	304	39.98	b.43.4.2,c.25.1.1	128815,128816
1j3gA	187	40.17	d.118.1.1	77075
1ly1A	181	40.68	c.37.1.1	74334
2aunA	317	41.34	c.8.10.1,c.23.16.7	127334,127335
1qnaA	200	44.88	d.129.1.1,d.129.1.1	41226,41227
2o95A	187	46.16		
1nf8A	207	49.04	c.33.1.3	85630
1nf9A	207	52.66	c.33.1.3	85631
1ad4A	266	55.49	c.1.21.1	29670
1mp9A	198	56.15	d.129.1.1,d.129.1.1	91385,91386
1ogiA	303	59.13	b.43.4.2,c.25.1.1	92914,92915
1aqb	183	59.49		
1aj2	282	73.19		
1dc1A	323	76.59	c.52.1.11	33321
1lf7A	182	76.71	b.60.1.1	73878
1g8sA	230	79.97	c.66.1.3	90507
1ghsA	306	82.47	c.1.8.3	28840
1zgdA	312	84.62		
2ckwA	515	86.06		
2p18A	311	88.42		
2qf4A	172	89.07