# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 2.03e-23 2b33A 140 1.57e-20 d.79.1.1 127765 1oniA 137 2.28e-20 d.79.1.1 87144 1jd1A 129 3.36e-20 d.79.1.1 62890 1qahA 136 3.42e-20 d.79.1.1 96338 1x25A 128 4.74e-20 d.79.1.1 121619 2cvlA 124 4.75e-20 d.79.1.1 130871 1qd9A 124 5.08e-20 d.79.1.1 39758 2uykA 129 1.82e-19 1qu9A 128 2.31e-19 d.79.1.1 39755 1pf5A 131 4.24e-19 d.79.1.1 94604 2ig8A 144 6.22e-19 2ewcA 126 8.27e-16 d.79.1.1 132454 1zl0A 311 2.791 c.8.10.1,c.23.16.7 125231,125232 1zrsA 317 4.937 c.8.10.1,c.23.16.7 125556,125557 1glcG 501 9.676 c.55.1.4,c.55.1.4 33519,33520 2aunA 317 10.45 c.8.10.1,c.23.16.7 127334,127335 2bmwA 304 12.32 b.43.4.2,c.25.1.1 128815,128816 1j3gA 187 12.99 d.118.1.1 77075 1qxyA 252 13.52 d.127.1.1 96565 2qf4A 172 14.10 8abp 306 15.79 1v30A 124 17.18 d.269.1.1 113496 1wn1A 356 18.56 1o60A 292 23.47 c.1.10.4 92532 1zc6A 305 23.94 c.55.1.5,c.55.1.5 124888,124889 1vs1A 276 25.17 2ch5A 347 25.61 c.55.1.5,c.55.1.5 130453,130454 1ly1A 181 27.07 c.37.1.1 74334 1ogiA 303 27.67 b.43.4.2,c.25.1.1 92914,92915 2b3hA 329 28.50 1zcoA 262 29.72 2aumA 317 31.98 c.8.10.1,c.23.16.7 127330,127331 1yuwA 554 32.19 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1y1nA 291 32.60 2egtA 132 33.14 1xkqA 280 33.80 c.2.1.2 115417 2ckwA 515 34.05 1aisA 182 38.71 d.129.1.1,d.129.1.1 41288,41289 1yg9A 330 39.65 1xnzA 264 41.06 d.127.1.1 115673 2bsaA 303 41.33 b.43.4.2,c.25.1.1 129078,129079 1xhlA 297 44.73 c.2.1.2 109591 2o1cA 150 45.46 2ebdA 309 45.63 1pv9A 348 45.63 c.55.2.1,d.127.1.1 95157,95158 1vs0A 310 47.21 1aj2 282 49.71 1ad4A 266 50.21 c.1.21.1 29670 1zgkA 308 51.00 1w34A 304 51.07 b.43.4.2,c.25.1.1 120620,120621 1mp9A 198 55.36 d.129.1.1,d.129.1.1 91385,91386 1o0xA 262 55.59 d.127.1.1 80755 1g8sA 230 58.61 c.66.1.3 90507 1c24A 263 59.84 d.127.1.1 41148 1zh1A 163 61.21 2qkbA 154 61.28 2j27A 250 62.35 1aopA 497 64.22 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1bu6O 501 66.78 c.55.1.4,c.55.1.4 33499,33500 2q8kA 401 67.96 2a2lA 145 70.61 d.110.9.1 126035 2gcuA 245 72.33 1qm9A 198 72.41 d.58.7.1,d.58.7.1 39207,39208 2v3zA 440 80.14 1ltqA 301 80.51 c.108.1.9,c.37.1.1 78208,78209 2p18A 311 81.00 1m4iA 181 81.10 d.108.1.1 74457 1hkxA 147 81.35 d.17.4.7 83567 2ggcA 263 82.20 d.127.1.1 135127 2qxlA 658 85.04 2aioA 269 85.57 d.157.1.1 126829 1wwjA 105 87.28 1aq0A 306 89.34 c.1.8.3 28842 1lf7A 182 89.68 b.60.1.1 73878 1nf8A 207 89.84 c.33.1.3 85630