# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	3.55e-22		
2b33A	140	1.31e-19	d.79.1.1	127765
1jd1A	129	1.53e-19	d.79.1.1	62890
1qd9A	124	1.92e-19	d.79.1.1	39758
1qahA	136	2.19e-19	d.79.1.1	96338
1oniA	137	2.22e-19	d.79.1.1	87144
1x25A	128	2.36e-19	d.79.1.1	121619
2cvlA	124	2.48e-19	d.79.1.1	130871
1qu9A	128	8.50e-19	d.79.1.1	39755
2uykA	129	1.37e-18		
2ig8A	144	1.54e-18		
1pf5A	131	3.48e-18	d.79.1.1	94604
2ewcA	126	1.40e-15	d.79.1.1	132454
1zc6A	305	4.094	c.55.1.5,c.55.1.5	124888,124889
2ch5A	347	5.281	c.55.1.5,c.55.1.5	130453,130454
1zl0A	311	7.031	c.8.10.1,c.23.16.7	125231,125232
1glcG	501	14.25	c.55.1.4,c.55.1.4	33519,33520
1zrsA	317	14.58	c.8.10.1,c.23.16.7	125556,125557
2bmwA	304	15.15	b.43.4.2,c.25.1.1	128815,128816
1o60A	292	18.57	c.1.10.4	92532
1nf8A	207	19.47	c.33.1.3	85630
8abp	306	20.68		
1zcoA	262	23.69		
1ly1A	181	24.58	c.37.1.1	74334
1aisA	182	25.34	d.129.1.1,d.129.1.1	41288,41289
1nf9A	207	26.99	c.33.1.3	85631
1qnaA	200	31.52	d.129.1.1,d.129.1.1	41226,41227
1aj2	282	31.88		
1vs1A	276	33.23		
2aunA	317	34.05	c.8.10.1,c.23.16.7	127334,127335
1j3gA	187	36.00	d.118.1.1	77075
1ad4A	266	39.76	c.1.21.1	29670
2ogxA	276	42.71		
1v30A	124	43.70	d.269.1.1	113496
1bg2A	325	44.10	c.37.1.9	32189
1dbfA	127	46.67	d.79.1.2	39761
2o95A	187	47.47		
1mp9A	198	48.56	d.129.1.1,d.129.1.1	91385,91386
1aqb	183	50.63		
1hkxA	147	52.15	d.17.4.7	83567
2egtA	132	53.38		
2gu2A	312	59.50		
2aumA	317	65.63	c.8.10.1,c.23.16.7	127330,127331
1tllA	688	70.23	b.43.4.1,c.23.5.2,c.25.1.4	107128,107129,107130
1qxyA	252	73.21	d.127.1.1	96565
1xa3A	437	75.07	c.123.1.1	115025
1m4iA	181	83.25	d.108.1.1	74457
1vdhA	249	85.66	d.58.4.10	108523
2qf4A	172	87.79		
2qkbA	154	88.62		
1ogiA	303	88.66	b.43.4.2,c.25.1.1	92914,92915