# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.53e-21		
2b33A	140	6.52e-19	d.79.1.1	127765
1jd1A	129	7.23e-19	d.79.1.1	62890
1oniA	137	9.72e-19	d.79.1.1	87144
1qd9A	124	1.02e-18	d.79.1.1	39758
1qahA	136	1.09e-18	d.79.1.1	96338
2cvlA	124	1.14e-18	d.79.1.1	130871
1x25A	128	1.22e-18	d.79.1.1	121619
1qu9A	128	3.38e-18	d.79.1.1	39755
2uykA	129	4.97e-18		
2ig8A	144	7.09e-18		
1pf5A	131	1.35e-17	d.79.1.1	94604
2ewcA	126	5.49e-15	d.79.1.1	132454
1zc6A	305	3.961	c.55.1.5,c.55.1.5	124888,124889
2ch5A	347	5.733	c.55.1.5,c.55.1.5	130453,130454
1zl0A	311	5.997	c.8.10.1,c.23.16.7	125231,125232
1zrsA	317	11.61	c.8.10.1,c.23.16.7	125556,125557
1glcG	501	15.24	c.55.1.4,c.55.1.4	33519,33520
1aisA	182	18.63	d.129.1.1,d.129.1.1	41288,41289
8abp	306	18.75		
1nf8A	207	20.59	c.33.1.3	85630
1vs1A	276	20.92		
2bmwA	304	21.26	b.43.4.2,c.25.1.1	128815,128816
1o60A	292	23.07	c.1.10.4	92532
1zcoA	262	24.95		
2aunA	317	25.44	c.8.10.1,c.23.16.7	127334,127335
1qnaA	200	27.09	d.129.1.1,d.129.1.1	41226,41227
1aj2	282	27.27		
1j3gA	187	27.84	d.118.1.1	77075
1nf9A	207	32.08	c.33.1.3	85631
1ly1A	181	34.89	c.37.1.1	74334
1mp9A	198	35.78	d.129.1.1,d.129.1.1	91385,91386
1v30A	124	35.97	d.269.1.1	113496
1aqb	183	37.13		
1ad4A	266	41.40	c.1.21.1	29670
2ogxA	276	46.11		
2aumA	317	54.15	c.8.10.1,c.23.16.7	127330,127331
1dbfA	127	54.77	d.79.1.2	39761
1n13B	113	58.35		
2egtA	132	62.52		
1hkxA	147	64.22	d.17.4.7	83567
1vdhA	249	64.23	d.58.4.10	108523
2gu2A	312	76.26		
1bg2A	325	79.99	c.37.1.9	32189
2o95A	187	87.45		
1rwtA	232	87.46	f.43.1.1	97992
1m4iA	181	88.84	d.108.1.1	74457