# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.59e-22		
2b33A	140	4.94e-20	d.79.1.1	127765
1jd1A	129	6.53e-20	d.79.1.1	62890
1qahA	136	8.10e-20	d.79.1.1	96338
1qd9A	124	8.74e-20	d.79.1.1	39758
1oniA	137	8.96e-20	d.79.1.1	87144
2cvlA	124	1.00e-19	d.79.1.1	130871
1x25A	128	1.14e-19	d.79.1.1	121619
1qu9A	128	3.53e-19	d.79.1.1	39755
2ig8A	144	4.88e-19		
2uykA	129	5.46e-19		
1pf5A	131	1.68e-18	d.79.1.1	94604
2ewcA	126	8.14e-16	d.79.1.1	132454
2ch5A	347	3.454	c.55.1.5,c.55.1.5	130453,130454
1zl0A	311	3.988	c.8.10.1,c.23.16.7	125231,125232
1zc6A	305	6.425	c.55.1.5,c.55.1.5	124888,124889
1zrsA	317	8.041	c.8.10.1,c.23.16.7	125556,125557
1vs1A	276	14.61		
1glcG	501	16.22	c.55.1.4,c.55.1.4	33519,33520
1aisA	182	16.92	d.129.1.1,d.129.1.1	41288,41289
2aunA	317	17.36	c.8.10.1,c.23.16.7	127334,127335
1o60A	292	17.43	c.1.10.4	92532
1ly1A	181	20.87	c.37.1.1	74334
1nf8A	207	22.41	c.33.1.3	85630
8abp	306	22.89		
2bmwA	304	24.13	b.43.4.2,c.25.1.1	128815,128816
1aj2	282	24.86		
1zcoA	262	25.17		
1qnaA	200	26.75	d.129.1.1,d.129.1.1	41226,41227
1j3gA	187	26.89	d.118.1.1	77075
1v30A	124	36.09	d.269.1.1	113496
1mp9A	198	39.30	d.129.1.1,d.129.1.1	91385,91386
2aumA	317	40.12	c.8.10.1,c.23.16.7	127330,127331
1ad4A	266	43.43	c.1.21.1	29670
2ogxA	276	43.71		
1nf9A	207	44.35	c.33.1.3	85631
1aqb	183	47.82		
2egtA	132	51.50		
1j77A	209	59.48	a.132.1.2	62674
1hkxA	147	69.73	d.17.4.7	83567
2gcuA	245	69.86		
1dbfA	127	72.64	d.79.1.2	39761
1vdhA	249	76.06	d.58.4.10	108523
1bg2A	325	77.94	c.37.1.9	32189
1qxyA	252	79.73	d.127.1.1	96565
1rwtA	232	81.16	f.43.1.1	97992
1lf7A	182	81.92	b.60.1.1	73878
2o95A	187	82.78		
2gu2A	312	84.56		
2qkbA	154	87.27		
2qf4A	172	87.46		
1m4iA	181	88.03	d.108.1.1	74457