# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	2.35e-21		
2b33A	140	1.08e-18	d.79.1.1	127765
1qahA	136	1.18e-18	d.79.1.1	96338
1oniA	137	1.39e-18	d.79.1.1	87144
1jd1A	129	2.09e-18	d.79.1.1	62890
2cvlA	124	2.32e-18	d.79.1.1	130871
1x25A	128	2.57e-18	d.79.1.1	121619
1qd9A	124	2.58e-18	d.79.1.1	39758
1qu9A	128	7.35e-18	d.79.1.1	39755
2uykA	129	7.85e-18		
2ig8A	144	1.31e-17		
1pf5A	131	2.27e-17	d.79.1.1	94604
2ewcA	126	1.44e-14	d.79.1.1	132454
8abp	306	3.783		
1j3gA	187	9.97	d.118.1.1	77075
2dorA	311	15.48	c.1.4.1	28593
2qxlA	658	16.16		
2djiA	590	17.35	c.31.1.3,c.36.1.5,c.36.1.9	131544,131545,131546
1zcoA	262	17.67		
1yuwA	554	18.12	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
1g8sA	230	18.82	c.66.1.3	90507
2nqrA	411	20.56	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1zl0A	311	20.91	c.8.10.1,c.23.16.7	125231,125232
1fbnA	230	21.22	c.66.1.3	34181
1dorA	311	22.08	c.1.4.1	28595
2akzA	439	22.20	c.1.11.1,d.54.1.1	126944,126945
1j77A	209	24.58	a.132.1.2	62674
1bu6O	501	25.31	c.55.1.4,c.55.1.4	33499,33500
1o60A	292	29.72	c.1.10.4	92532
1jubA	311	30.40	c.1.4.1	90908
1ly1A	181	32.34	c.37.1.1	74334
1cfzA	162	32.68	c.56.1.1	33754
2jgqA	233	33.80		
2ch5A	347	42.29	c.55.1.5,c.55.1.5	130453,130454
2gmnA	274	43.99		
2p3rA	510	45.23	c.55.1.4,c.55.1.4	139471,139472
1zrsA	317	45.55	c.8.10.1,c.23.16.7	125556,125557
2ebdA	309	45.60		
1glcG	501	49.33	c.55.1.4,c.55.1.4	33519,33520
2a7mA	250	51.80		
1g12A	167	54.65	d.92.1.12	60193
2p18A	311	55.52		
1nf8A	207	55.61	c.33.1.3	85630
2a8lA	420	55.81		
1aj2	282	56.10		
1p9eA	331	56.76	d.157.1.5	104088
1aq0A	306	56.97	c.1.8.3	28842
1zc6A	305	59.52	c.55.1.5,c.55.1.5	124888,124889
2cygA	312	62.40	c.1.8.3	131025
2qmcB	188	63.92		
2i5iA	263	67.24		
1zgkA	308	67.27		
1aisA	182	72.20	d.129.1.1,d.129.1.1	41288,41289
1vs1A	276	76.46		
2lisA	136	76.99	a.19.1.1	16405
3beoA	375	78.45		
8abpA	306	79.33	c.93.1.1	35647
1xkqA	280	80.86	c.2.1.2	115417
2r1fA	270	82.88		
2hkvA	149	83.19		
1qwdA	177	86.21	b.60.1.1	96471
2aioA	269	89.94	d.157.1.1	126829