# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 1.63e-22 2b33A 140 2.28e-20 d.79.1.1 127765 1jd1A 129 4.33e-20 d.79.1.1 62890 1qd9A 124 4.87e-20 d.79.1.1 39758 1oniA 137 5.32e-20 d.79.1.1 87144 2cvlA 124 6.00e-20 d.79.1.1 130871 1qahA 136 7.60e-20 d.79.1.1 96338 1x25A 128 1.68e-19 d.79.1.1 121619 2uykA 129 3.32e-19 1pf5A 131 3.79e-19 d.79.1.1 94604 1qu9A 128 4.73e-19 d.79.1.1 39755 2ig8A 144 6.46e-19 2ewcA 126 1.38e-15 d.79.1.1 132454 1zl0A 311 6.147 c.8.10.1,c.23.16.7 125231,125232 1zc6A 305 7.068 c.55.1.5,c.55.1.5 124888,124889 1zrsA 317 9.501 c.8.10.1,c.23.16.7 125556,125557 1glcG 501 11.23 c.55.1.4,c.55.1.4 33519,33520 1vs1A 276 18.87 1zcoA 262 19.98 2ch5A 347 20.41 c.55.1.5,c.55.1.5 130453,130454 2o95A 187 21.48 1o60A 292 23.80 c.1.10.4 92532 2aunA 317 24.14 c.8.10.1,c.23.16.7 127334,127335 2bmwA 304 24.81 b.43.4.2,c.25.1.1 128815,128816 1v30A 124 31.38 d.269.1.1 113496 1nf8A 207 37.35 c.33.1.3 85630 2o1cA 150 38.17 1ly1A 181 39.16 c.37.1.1 74334 1qxyA 252 41.55 d.127.1.1 96565 1aisA 182 42.10 d.129.1.1,d.129.1.1 41288,41289 1j3gA 187 42.31 d.118.1.1 77075 2jgqA 233 42.64 1nf9A 207 44.75 c.33.1.3 85631 2ogxA 276 45.17 2aumA 317 45.53 c.8.10.1,c.23.16.7 127330,127331 2qf4A 172 46.62 2pezA 179 49.10 1qnaA 200 49.50 d.129.1.1,d.129.1.1 41226,41227 1amuA 563 49.76 e.23.1.1 43351 2ckwA 515 50.42 1ad4A 266 51.01 c.1.21.1 29670 8abp 306 51.32 1aj2 282 56.53 1thfD 253 57.67 c.1.2.1 28535 1m4iA 181 57.84 d.108.1.1 74457 1dc1A 323 59.05 c.52.1.11 33321 2p18A 311 63.18 1g8sA 230 63.56 c.66.1.3 90507 1bu6O 501 64.78 c.55.1.4,c.55.1.4 33499,33500 1vdhA 249 65.15 d.58.4.10 108523 2ebdA 309 66.28 1z6rA 406 67.11 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 1ltqA 301 70.20 c.108.1.9,c.37.1.1 78208,78209 1mp9A 198 75.10 d.129.1.1,d.129.1.1 91385,91386 1p9eA 331 76.63 d.157.1.5 104088 2akzA 439 77.46 c.1.11.1,d.54.1.1 126944,126945 1zh1A 163 80.62 2i8tA 167 80.99 1nksA 194 82.50 c.37.1.1 31886 1xkqA 280 87.33 c.2.1.2 115417 1lf7A 182 88.98 b.60.1.1 73878