# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 8.96e-26 2b33A 140 6.39e-23 d.79.1.1 127765 1qd9A 124 8.85e-23 d.79.1.1 39758 1jd1A 129 8.87e-23 d.79.1.1 62890 1oniA 137 1.51e-22 d.79.1.1 87144 1qahA 136 1.63e-22 d.79.1.1 96338 2cvlA 124 1.66e-22 d.79.1.1 130871 1qu9A 128 1.72e-22 d.79.1.1 39755 1x25A 128 2.45e-22 d.79.1.1 121619 2uykA 129 9.00e-22 1pf5A 131 1.72e-21 d.79.1.1 94604 2ig8A 144 2.24e-21 2ewcA 126 1.22e-17 d.79.1.1 132454 2qo3A 915 1.320 1eejA 216 3.369 c.47.1.9,d.17.3.1 33057,38071 2ch5A 347 3.426 c.55.1.5,c.55.1.5 130453,130454 1zcoA 262 3.922 1ra0A 430 4.602 b.92.1.2,c.1.9.5 111756,111757 8abp 306 5.666 1zgdA 312 6.736 1zc6A 305 6.762 c.55.1.5,c.55.1.5 124888,124889 1mdbA 539 6.949 e.23.1.1 79008 1j3nA 408 7.449 c.95.1.1,c.95.1.1 84074,84075 1b5qA 472 12.59 c.3.1.2,d.16.1.5 30404,37968 1j3gA 187 12.71 d.118.1.1 77075 1bd3A 243 12.87 c.61.1.1 34098 2hoeA 380 13.35 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2jgqA 233 14.48 1vs1A 276 15.32 2jfgA 445 17.40 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 2ok8A 316 18.29 1o60A 292 19.17 c.1.10.4 92532 2vjqA 428 20.08 2fozA 347 21.27 1j4aA 333 21.90 c.2.1.4,c.23.12.1 71502,71503 1r5tA 142 22.23 c.97.1.1 104812 3b6uA 372 22.80 1v30A 124 22.85 d.269.1.1 113496 1b65A 375 23.07 d.154.1.1 42020 2ivnA 330 23.12 1vk2A 204 26.42 c.18.1.2 100845 3bwvA 180 26.56 1hzpA 335 26.89 c.95.1.2,c.95.1.2 61455,61456 1pjrA 724 27.07 c.37.1.19,c.37.1.19 32391,32392 1ly1A 181 27.08 c.37.1.1 74334 2ouiA 360 29.03 2ogxA 276 29.03 2c9eA 327 30.98 1mx3A 347 31.98 c.2.1.4,c.23.12.1 79638,79639 1lf7A 182 32.85 b.60.1.1 73878 1qh5A 260 34.29 d.157.1.2 42057 1nf9A 207 34.40 c.33.1.3 85631 2jhfA 374 34.49 b.35.1.2,c.2.1.1 138314,138315 1smlA 269 35.08 d.157.1.1 42053 1ad4A 266 35.19 c.1.21.1 29670 1khvA 516 37.23 e.8.1.4 68627 2p02A 396 37.27 1dbfA 127 37.32 d.79.1.2 39761 2egtA 132 38.10 1xl7A 612 39.90 c.43.1.3,c.43.1.3 115438,115439 1wn1A 356 41.37 2cf5A 357 44.43 2bsaA 303 45.81 b.43.4.2,c.25.1.1 129078,129079 1wb0A 445 45.91 c.1.8.5,d.26.3.1 120825,120826 2d4wA 504 46.02 2nutC 196 47.72 1yroB 286 48.24 c.68.1.2 123932 2p18A 311 48.61 1o5oA 221 48.87 c.61.1.1 92509 1hkxA 147 49.34 d.17.4.7 83567 1q8rA 120 49.44 d.79.6.1 96225 1xk7A 408 49.85 c.123.1.1 122071 1ad1A 266 51.09 c.1.21.1 29668 2gcuA 245 51.58 2rjoA 332 51.94 1mp9A 198 52.00 d.129.1.1,d.129.1.1 91385,91386 1s2oA 244 52.32 c.108.1.10 118846 1dc1A 323 52.76 c.52.1.11 33321 1vh7A 265 53.26 c.1.2.1 100646 1nf8A 207 55.37 c.33.1.3 85630 2qv2A 342 55.88 1l5aA 436 55.91 c.43.1.2,c.43.1.2 75923,75924 2rhmA 193 55.97 1aq0A 306 56.16 c.1.8.3 28842 1rifA 282 56.55 c.37.1.23 97507 2bmwA 304 56.78 b.43.4.2,c.25.1.1 128815,128816 1h1yA 228 57.82 c.1.2.2 76506 2b5wA 357 59.78 1vr6A 350 60.18 c.1.10.4 120439 8abpA 306 60.19 c.93.1.1 35647 2i7nA 360 60.32 2j5uA 255 60.62 2ts1 419 60.89 1qm9A 198 62.68 d.58.7.1,d.58.7.1 39207,39208 1q7eA 428 63.19 c.123.1.1 96035 1thfD 253 63.32 c.1.2.1 28535 2o95A 187 63.97 2jx0A 135 64.02 1jz8A 1023 64.77 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 2ix4A 431 65.84 c.95.1.1,c.95.1.1 137759,137760 1e5dA 402 67.91 c.23.5.1,d.157.1.3 31208,42061 1xa3A 437 68.99 c.123.1.1 115025 2cb0A 333 69.30 1zl0A 311 69.56 c.8.10.1,c.23.16.7 125231,125232 1nnhA 294 71.21 d.104.1.1 92005 1pt7A 437 71.26 c.123.1.1 95093 2abbA 364 71.73 c.1.4.1 126517 1xdwA 331 71.74 2a7wA 116 72.98 a.204.1.4 126369 2o1cA 150 75.10 1ocsA 162 75.49 d.189.1.1 92776 2obwA 258 75.73 2tpt 440 75.99 1ui0A 205 76.65 c.18.1.2 99411 1z7aA 308 78.27 c.6.2.6 124591 2aioA 269 79.75 d.157.1.1 126829 1ae7A 119 83.26 a.133.1.2 19553 1uasA 362 83.48 b.71.1.1,c.1.8.1 88388,88389 1dxy 333 84.14 2o5aA 125 84.17 2i7pA 362 84.62 1h4vB 421 85.11 c.51.1.1,d.104.1.1 60624,60625 2qkbA 154 85.54 2h8eA 120 87.47 1j96A 323 88.35 c.1.7.1 71616 2fbaA 492 89.25 a.102.1.1 133239 1v4vA 376 89.42 c.87.1.3 100313 1hjxA 362 89.58 c.1.8.5,d.26.3.1 83512,83513 2pptA 155 89.92 1cs0A 1073 89.95 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519