# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	3.42e-22		
2b33A	140	2.83e-20	d.79.1.1	127765
1jd1A	129	5.51e-20	d.79.1.1	62890
1qd9A	124	6.06e-20	d.79.1.1	39758
1oniA	137	6.60e-20	d.79.1.1	87144
2cvlA	124	6.91e-20	d.79.1.1	130871
1qahA	136	8.31e-20	d.79.1.1	96338
1x25A	128	1.72e-19	d.79.1.1	121619
2uykA	129	3.58e-19		
1qu9A	128	5.66e-19	d.79.1.1	39755
1pf5A	131	5.78e-19	d.79.1.1	94604
2ig8A	144	7.92e-19		
2ewcA	126	2.79e-15	d.79.1.1	132454
1zl0A	311	6.447	c.8.10.1,c.23.16.7	125231,125232
1zc6A	305	8.058	c.55.1.5,c.55.1.5	124888,124889
1zrsA	317	9.801	c.8.10.1,c.23.16.7	125556,125557
1glcG	501	12.37	c.55.1.4,c.55.1.4	33519,33520
2bmwA	304	17.02	b.43.4.2,c.25.1.1	128815,128816
1vs1A	276	18.33		
2ch5A	347	18.85	c.55.1.5,c.55.1.5	130453,130454
1o60A	292	24.78	c.1.10.4	92532
1v30A	124	25.20	d.269.1.1	113496
2aunA	317	25.71	c.8.10.1,c.23.16.7	127334,127335
1zcoA	262	29.76		
1qnaA	200	30.85	d.129.1.1,d.129.1.1	41226,41227
1qxyA	252	31.90	d.127.1.1	96565
1j3gA	187	34.08	d.118.1.1	77075
1aisA	182	35.43	d.129.1.1,d.129.1.1	41288,41289
2o1cA	150	36.02		
1g8sA	230	39.28	c.66.1.3	90507
1ly1A	181	46.05	c.37.1.1	74334
1nf9A	207	52.39	c.33.1.3	85631
1nf8A	207	52.48	c.33.1.3	85630
1mp9A	198	53.96	d.129.1.1,d.129.1.1	91385,91386
2aumA	317	56.15	c.8.10.1,c.23.16.7	127330,127331
1dc1A	323	56.65	c.52.1.11	33321
2jgqA	233	57.09		
8abp	306	57.41		
1amuA	563	57.72	e.23.1.1	43351
2pezA	179	58.41		
2ogxA	276	58.47		
2qf4A	172	59.09		
1m4iA	181	61.23	d.108.1.1	74457
2o95A	187	61.97		
1vdhA	249	62.23	d.58.4.10	108523
1bu6O	501	63.09	c.55.1.4,c.55.1.4	33499,33500
1fbnA	230	65.94	c.66.1.3	34181
1aj2	282	68.58		
1ad4A	266	69.00	c.1.21.1	29670
1lf7A	182	75.23	b.60.1.1	73878
1thfD	253	76.02	c.1.2.1	28535
2ebdA	309	76.49		
1nksA	194	81.84	c.37.1.1	31886
1z6rA	406	83.93	a.4.5.63,c.55.1.10,c.55.1.10	124557,124558,124559