# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	5.62e-25		
2b33A	140	1.17e-22	d.79.1.1	127765
1oniA	137	2.13e-22	d.79.1.1	87144
1jd1A	129	2.21e-22	d.79.1.1	62890
1qd9A	124	2.85e-22	d.79.1.1	39758
1qahA	136	3.39e-22	d.79.1.1	96338
2cvlA	124	3.45e-22	d.79.1.1	130871
1x25A	128	6.68e-22	d.79.1.1	121619
1qu9A	128	1.93e-21	d.79.1.1	39755
2uykA	129	2.17e-21		
2ig8A	144	3.02e-21		
1pf5A	131	6.40e-21	d.79.1.1	94604
2ewcA	126	8.66e-18	d.79.1.1	132454
1zl0A	311	5.548	c.8.10.1,c.23.16.7	125231,125232
1zrsA	317	7.457	c.8.10.1,c.23.16.7	125556,125557
1zc6A	305	8.493	c.55.1.5,c.55.1.5	124888,124889
2ch5A	347	8.593	c.55.1.5,c.55.1.5	130453,130454
1glcG	501	10.21	c.55.1.4,c.55.1.4	33519,33520
1vs1A	276	13.93		
1j3gA	187	16.11	d.118.1.1	77075
2aunA	317	17.34	c.8.10.1,c.23.16.7	127334,127335
1ly1A	181	21.06	c.37.1.1	74334
1nf8A	207	23.05	c.33.1.3	85630
2bmwA	304	24.74	b.43.4.2,c.25.1.1	128815,128816
1aisA	182	25.08	d.129.1.1,d.129.1.1	41288,41289
1m4iA	181	26.87	d.108.1.1	74457
1o60A	292	27.81	c.1.10.4	92532
1zcoA	262	28.09		
1v30A	124	32.63	d.269.1.1	113496
2o1cA	150	35.73		
2egtA	132	36.41		
1nf9A	207	37.75	c.33.1.3	85631
1qnaA	200	39.52	d.129.1.1,d.129.1.1	41226,41227
2aumA	317	39.68	c.8.10.1,c.23.16.7	127330,127331
2o95A	187	40.02		
1ogiA	303	45.70	b.43.4.2,c.25.1.1	92914,92915
2qkbA	154	45.76		
1hkxA	147	46.24	d.17.4.7	83567
2jgqA	233	46.35		
1aqb	183	49.19		
1mp9A	198	51.77	d.129.1.1,d.129.1.1	91385,91386
1amuA	563	58.92	e.23.1.1	43351
2dlwA	113	63.89		
2bsaA	303	74.72	b.43.4.2,c.25.1.1	129078,129079
1lf7A	182	76.06	b.60.1.1	73878
1bu6O	501	77.18	c.55.1.4,c.55.1.4	33499,33500
2qf4A	172	78.42		
1aj2	282	78.77		
1qxyA	252	79.15	d.127.1.1	96565
1ltqA	301	79.67	c.108.1.9,c.37.1.1	78208,78209
2ok8A	316	80.22		
2ogxA	276	83.75		
1j77A	209	84.26	a.132.1.2	62674
2ipxA	233	84.84		
1cuk	203	85.34		
1ad4A	266	87.21	c.1.21.1	29670
3bs6A	280	88.49		
1tllA	688	88.82	b.43.4.1,c.23.5.2,c.25.1.4	107128,107129,107130