# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	1.03e-22		
2b33A	140	3.00e-20	d.79.1.1	127765
1oniA	137	5.68e-20	d.79.1.1	87144
1qd9A	124	6.36e-20	d.79.1.1	39758
1jd1A	129	7.55e-20	d.79.1.1	62890
1qahA	136	8.57e-20	d.79.1.1	96338
2cvlA	124	8.95e-20	d.79.1.1	130871
1x25A	128	9.24e-20	d.79.1.1	121619
1qu9A	128	3.99e-19	d.79.1.1	39755
2uykA	129	4.86e-19		
2ig8A	144	6.50e-19		
1pf5A	131	1.16e-18	d.79.1.1	94604
2ewcA	126	6.55e-16	d.79.1.1	132454
1zl0A	311	6.449	c.8.10.1,c.23.16.7	125231,125232
1glcG	501	8.453	c.55.1.4,c.55.1.4	33519,33520
1zrsA	317	9.207	c.8.10.1,c.23.16.7	125556,125557
1j3gA	187	14.99	d.118.1.1	77075
1zc6A	305	18.99	c.55.1.5,c.55.1.5	124888,124889
2aunA	317	19.92	c.8.10.1,c.23.16.7	127334,127335
1aisA	182	21.94	d.129.1.1,d.129.1.1	41288,41289
1ly1A	181	23.54	c.37.1.1	74334
2bmwA	304	23.76	b.43.4.2,c.25.1.1	128815,128816
1vs1A	276	28.08		
1zcoA	262	30.08		
2egtA	132	34.83		
2p18A	311	34.84		
2ok8A	316	37.16		
2jgqA	233	38.36		
1mp9A	198	38.57	d.129.1.1,d.129.1.1	91385,91386
1v30A	124	39.40	d.269.1.1	113496
1ogiA	303	39.87	b.43.4.2,c.25.1.1	92914,92915
2ch5A	347	41.29	c.55.1.5,c.55.1.5	130453,130454
2qkbA	154	45.91		
2qf4A	172	46.61		
1qxyA	252	46.85	d.127.1.1	96565
1aqb	183	51.70		
1qnaA	200	52.52	d.129.1.1,d.129.1.1	41226,41227
2ipxA	233	55.56		
1o60A	292	55.85	c.1.10.4	92532
1g8sA	230	56.70	c.66.1.3	90507
2o1cA	150	58.09		
1nf8A	207	58.87	c.33.1.3	85630
8abp	306	59.20		
1xkqA	280	61.95	c.2.1.2	115417
2aumA	317	62.04	c.8.10.1,c.23.16.7	127330,127331
1bu6O	501	63.76	c.55.1.4,c.55.1.4	33499,33500
2cygA	312	65.89	c.1.8.3	131025
1aq0A	306	73.56	c.1.8.3	28842
1m4iA	181	76.33	d.108.1.1	74457
1aj2	282	78.53		
1ad4A	266	78.68	c.1.21.1	29670
3bs6A	280	80.25		
1wwjA	105	80.36		
1lf7A	182	81.14	b.60.1.1	73878
1y1nA	291	83.82		
1yuwA	554	86.59	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072