# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	6.05e-24		
2b33A	140	3.27e-21	d.79.1.1	127765
1jd1A	129	4.31e-21	d.79.1.1	62890
1oniA	137	5.14e-21	d.79.1.1	87144
1qd9A	124	6.14e-21	d.79.1.1	39758
1qahA	136	7.03e-21	d.79.1.1	96338
2cvlA	124	1.05e-20	d.79.1.1	130871
1x25A	128	1.13e-20	d.79.1.1	121619
1qu9A	128	3.50e-20	d.79.1.1	39755
2uykA	129	5.67e-20		
2ig8A	144	6.00e-20		
1pf5A	131	8.61e-20	d.79.1.1	94604
2ewcA	126	1.15e-16	d.79.1.1	132454
1glcG	501	7.842	c.55.1.4,c.55.1.4	33519,33520
1zl0A	311	8.978	c.8.10.1,c.23.16.7	125231,125232
1zrsA	317	11.44	c.8.10.1,c.23.16.7	125556,125557
1zc6A	305	11.79	c.55.1.5,c.55.1.5	124888,124889
1vs1A	276	14.12		
1j3gA	187	16.18	d.118.1.1	77075
2ch5A	347	16.85	c.55.1.5,c.55.1.5	130453,130454
1zcoA	262	16.91		
1ly1A	181	20.54	c.37.1.1	74334
2aunA	317	26.10	c.8.10.1,c.23.16.7	127334,127335
2o1cA	150	26.59		
1v30A	124	26.74	d.269.1.1	113496
1aisA	182	27.99	d.129.1.1,d.129.1.1	41288,41289
1o60A	292	28.12	c.1.10.4	92532
2egtA	132	31.06		
1qxyA	252	34.25	d.127.1.1	96565
2jgqA	233	37.14		
1aj2	282	44.08		
1qnaA	200	45.15	d.129.1.1,d.129.1.1	41226,41227
2bmwA	304	45.20	b.43.4.2,c.25.1.1	128815,128816
2qkbA	154	46.09		
1mp9A	198	46.91	d.129.1.1,d.129.1.1	91385,91386
1hkxA	147	47.41	d.17.4.7	83567
1ad4A	266	49.85	c.1.21.1	29670
2ok8A	316	53.62		
1lf7A	182	61.18	b.60.1.1	73878
1j77A	209	62.43	a.132.1.2	62674
1nf8A	207	63.69	c.33.1.3	85630
1bu6O	501	65.24	c.55.1.4,c.55.1.4	33499,33500
2qf4A	172	66.28		
2aumA	317	67.00	c.8.10.1,c.23.16.7	127330,127331
1ltqA	301	69.25	c.108.1.9,c.37.1.1	78208,78209
1g8sA	230	70.35	c.66.1.3	90507
1ogiA	303	71.16	b.43.4.2,c.25.1.1	92914,92915
2p18A	311	71.75		
8abp	306	72.50		
1aqb	183	73.59		
2ogxA	276	79.04		
1xkqA	280	79.69	c.2.1.2	115417
1ghsA	306	82.32	c.1.8.3	28840
1amuA	563	84.74	e.23.1.1	43351
1m4iA	181	89.23	d.108.1.1	74457