# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2otmA	154	6.29e-20		
2b33A	140	2.65e-17	d.79.1.1	127765
1oniA	137	2.93e-17	d.79.1.1	87144
1qahA	136	3.29e-17	d.79.1.1	96338
1jd1A	129	3.73e-17	d.79.1.1	62890
1qd9A	124	5.57e-17	d.79.1.1	39758
1x25A	128	6.26e-17	d.79.1.1	121619
2cvlA	124	7.79e-17	d.79.1.1	130871
2ig8A	144	8.38e-17		
1qu9A	128	1.95e-16	d.79.1.1	39755
2uykA	129	2.24e-16		
1pf5A	131	5.14e-16	d.79.1.1	94604
2ewcA	126	5.08e-13	d.79.1.1	132454
1aj2	282	10.59		
1zcoA	262	12.80		
1o60A	292	14.19	c.1.10.4	92532
2djiA	590	16.59	c.31.1.3,c.36.1.5,c.36.1.9	131544,131545,131546
2qe6A	274	17.53		
2vefA	314	20.80		
2p18A	311	21.93		
1j3gA	187	24.54	d.118.1.1	77075
1ad4A	266	25.12	c.1.21.1	29670
1aj2A	282	28.91	c.1.21.1	29665
1ad1A	266	29.04	c.1.21.1	29668
8abp	306	30.87		
2dorA	311	32.53	c.1.4.1	28593
1eyeA	280	32.88	c.1.21.1	29672
2gouA	365	34.31		
1vhvA	268	41.04	c.90.1.1	100704
1glcG	501	45.76	c.55.1.4,c.55.1.4	33519,33520
1fbnA	230	47.48	c.66.1.3	34181
2pgnA	589	47.89		
2cygA	312	48.69	c.1.8.3	131025
1g8sA	230	49.23	c.66.1.3	90507
1t0aA	159	50.86	d.79.5.1	112192
2amxA	376	54.48	c.1.9.1	127024
2z10A	194	54.92		
2a7mA	250	55.07		
2ch5A	347	56.44	c.55.1.5,c.55.1.5	130453,130454
2nxwA	565	57.82		
1dorA	311	67.26	c.1.4.1	28595
1zgkA	308	67.57		
2uz1A	563	68.25		
2gzaA	361	68.68		
2nxfA	322	74.17		
1bu6O	501	76.01	c.55.1.4,c.55.1.4	33499,33500
1zhaA	267	76.35		
2nwrA	267	76.83		
1kpsB	171	77.06	a.118.12.1	68787
1ui0A	205	77.89	c.18.1.2	99411
1p9eA	331	78.37	d.157.1.5	104088
1sesA	421	78.83	a.2.7.1,d.104.1.1	15710,40710
1jubA	311	80.95	c.1.4.1	90908
1cfzA	162	82.69	c.56.1.1	33754
2c0hA	353	83.02	c.1.8.3	129594
1jjtA	228	84.44	d.157.1.1	63139
2basA	431	85.08	c.1.33.1,d.110.6.2	128244,128245
1zrsA	317	87.05	c.8.10.1,c.23.16.7	125556,125557