# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2otmA 154 3.63e-23 2b33A 140 5.52e-20 d.79.1.1 127765 1jd1A 129 1.07e-19 d.79.1.1 62890 1qahA 136 1.22e-19 d.79.1.1 96338 1oniA 137 1.58e-19 d.79.1.1 87144 1qd9A 124 1.61e-19 d.79.1.1 39758 2cvlA 124 1.98e-19 d.79.1.1 130871 1x25A 128 2.24e-19 d.79.1.1 121619 2uykA 129 6.46e-19 1qu9A 128 7.91e-19 d.79.1.1 39755 2ig8A 144 1.25e-18 1pf5A 131 2.21e-18 d.79.1.1 94604 2ewcA 126 1.75e-15 d.79.1.1 132454 2ch5A 347 1.110 c.55.1.5,c.55.1.5 130453,130454 1o60A 292 4.986 c.1.10.4 92532 1zcoA 262 6.086 1zl0A 311 6.286 c.8.10.1,c.23.16.7 125231,125232 1zc6A 305 7.415 c.55.1.5,c.55.1.5 124888,124889 1p9eA 331 10.41 d.157.1.5 104088 1zrsA 317 10.91 c.8.10.1,c.23.16.7 125556,125557 2jfgA 445 12.38 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 1wleA 501 16.92 2aunA 317 18.88 c.8.10.1,c.23.16.7 127334,127335 1sesA 421 21.07 a.2.7.1,d.104.1.1 15710,40710 1j3gA 187 22.87 d.118.1.1 77075 1z6rA 406 23.35 a.4.5.63,c.55.1.10,c.55.1.10 124557,124558,124559 2aumA 317 23.38 c.8.10.1,c.23.16.7 127330,127331 2p18A 311 23.59 2cygA 312 27.28 c.1.8.3 131025 1ui0A 205 28.16 c.18.1.2 99411 2q71A 356 30.37 2nwrA 267 31.78 1zhaA 267 32.17 1ghsA 306 32.37 c.1.8.3 28840 1ly1A 181 33.29 c.37.1.1 74334 1dorA 311 33.75 c.1.4.1 28595 1zgkA 308 35.99 1rzmA 338 36.11 c.1.10.4 105137 1s7hA 200 38.96 d.58.48.2 105349 1jubA 311 39.43 c.1.4.1 90908 1aj2 282 39.79 2jgqA 233 44.19 2o95A 187 44.72 1glcG 501 44.77 c.55.1.4,c.55.1.4 33519,33520 1vk2A 204 45.30 c.18.1.2 100845 3be7A 408 45.78 1u6zA 513 45.80 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1r3sA 367 46.66 c.1.22.1 96963 1vs1A 276 47.69 1xjo 284 48.87 1bu6O 501 50.12 c.55.1.4,c.55.1.4 33499,33500 2dorA 311 50.92 c.1.4.1 28593 2a7mA 250 52.66 2rb7A 364 52.72 1wn1A 356 59.78 1vr6A 350 59.83 c.1.10.4 120439 8abp 306 60.65 2hoeA 380 62.29 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 1aisA 182 64.11 d.129.1.1,d.129.1.1 41288,41289 3bpzA 202 64.76 1qq9A 284 68.02 c.56.5.4 33841 2vefA 314 70.73 1jpkA 388 71.44 c.1.22.1 67026 2gmnA 274 72.68 1p5fA 189 73.03 c.23.16.2 94142 1pe1A 267 73.08 c.1.10.4 94591 2yxnA 322 76.48 1u1iA 392 78.22 c.2.1.3,d.81.1.3 107582,107583 1aq0A 306 79.12 c.1.8.3 28842 1rifA 282 80.48 c.37.1.23 97507 2phjA 251 81.75 1tu6A 215 85.03 d.3.1.1 107318 2aioA 269 86.46 d.157.1.1 126829 1vjnA 220 86.55 d.157.1.4 100825 1o5oA 221 87.33 c.61.1.1 92509 1o98A 511 87.58 c.105.1.1,c.76.1.3 86684,86685 1g8sA 230 87.59 c.66.1.3 90507 2q4zA 312 87.73 2g72A 289 89.38 c.66.1.15 134724