# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1qahA	136	2.71e-17	d.79.1.1	96338
2otmA	154	3.66e-17		
2b33A	140	8.47e-17	d.79.1.1	127765
2cvlA	124	1.00e-16	d.79.1.1	130871
1oniA	137	1.01e-16	d.79.1.1	87144
1x25A	128	1.09e-16	d.79.1.1	121619
1jd1A	129	1.83e-16	d.79.1.1	62890
1qd9A	124	3.05e-16	d.79.1.1	39758
2uykA	129	2.78e-15		
1qu9A	128	9.10e-15	d.79.1.1	39755
1pf5A	131	9.19e-15	d.79.1.1	94604
2ig8A	144	1.40e-13		
2ewcA	126	5.51e-11	d.79.1.1	132454
1vk2A	204	5.786	c.18.1.2	100845
1tuhA	156	11.50	d.17.4.11	107345
2ozpA	345	13.73		
2c9hA	444	17.42		
2nutC	196	17.55		
8abpA	306	19.07	c.93.1.1	35647
1ui0A	205	24.96	c.18.1.2	99411
1txjA	171	25.00	b.88.1.2	107424
1b4pA	217	25.35	a.45.1.1,c.47.1.5	83158,83159
2d0oA	610	26.76	c.8.6.1,c.55.1.6,c.55.1.6	131075,131076,131077
2ap1A	327	28.88	c.55.1.10,c.55.1.10	127108,127109
1pg4A	652	29.02	e.23.1.1	88067
2nrkA	173	29.42		
1b8oA	284	30.59	c.56.2.1	33762
8abp	306	30.80		
1uthA	315	34.03	c.94.1.1	108032
3c8lA	122	35.11		
1rreA	200	35.51	d.14.1.10	97791
1w63Q	158	38.76	i.23.1.1	109208
1z2zA	446	40.24		
1bu6O	501	41.27	c.55.1.4,c.55.1.4	33499,33500
1zcoA	262	45.22		
2uyeA	307	47.40		
1fjgB	256	47.67	c.23.15.1	31400
2ouiA	360	47.72		
1p1jA	533	48.09	c.2.1.3,d.81.1.3	87687,87688
1vj7A	393	49.35	a.211.1.1,d.218.1.8	100801,100802
2eaqA	90	49.78		
1iv3A	152	50.07	d.79.5.1	76828
1sesA	421	50.23	a.2.7.1,d.104.1.1	15710,40710
1nf3C	128	52.00	b.36.1.1	85596
2q4kA	251	52.19	d.86.1.2	139864
2qtpA	194	52.35		
1fj2A	232	53.12	c.69.1.14	34720
1qwdA	177	53.90	b.60.1.1	96471
1sbxA	106	53.91	a.6.1.4	105414
6gsvA	217	54.44	a.45.1.1,c.47.1.5	17633,32925
1itg	166	56.28		
2qm1A	326	56.70		
3bjdA	332	57.18		
2qsxA	218	59.10		
1y9aA	360	61.10		
1mk4A	157	63.35	d.108.1.1	84979
1gx1A	160	65.04	d.79.5.1	70675
2ix4A	431	67.68	c.95.1.1,c.95.1.1	137759,137760
3b5eA	223	67.95		
2jgqA	233	68.93		
2ox9A	140	70.03		
2h3gX	268	70.47		
1ejeA	192	70.50	b.45.1.2	25757
2ebdA	309	72.30		
2v90A	96	72.43		
2e67A	264	72.67		
1lluA	342	72.96	b.35.1.2,c.2.1.1	91064,91065
2egoA	96	73.07		
1tqyA	424	76.16	c.95.1.1,c.95.1.1	107245,107246
1rv9A	259	79.82	d.194.1.2	105105
1dbfA	127	80.54	d.79.1.2	39761
2b9wA	424	80.98		
1oz9A	150	81.88	d.92.1.15	93808
2j8sA	1055	82.08		
2reyA	100	82.16		
1zd8A	227	83.02		
2vglS	142	83.28		
1uwcA	261	83.79	c.69.1.17	100101
1pfo	500	86.14		
1oe8A	211	86.93	a.45.1.1,c.47.1.5	86905,86906
2i9uA	439	89.88