# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e32A 458 1.33e-12 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1xwiA 322 2.10e-12 3b9pA 297 3.12e-12 1lv7A 257 4.10e-12 c.37.1.20 78232 1in6A 334 3.15e-10 a.4.5.11,c.37.1.20 62601,62602 1hqcA 324 3.53e-10 a.4.5.11,c.37.1.20 16127,32424 1in4A 334 5.75e-10 a.4.5.11,c.37.1.20 62597,62598 2c9oA 456 7.63e-10 1sxjA 511 7.90e-10 a.80.1.1,c.37.1.20 106081,106082 1sxjC 340 1.68e-09 a.80.1.1,c.37.1.20 106085,106086 1ofhA 310 2.27e-09 c.37.1.20 86948 1do0A 442 3.09e-09 c.37.1.20 32432 1iqpA 327 3.78e-09 a.80.1.1,c.37.1.20 62649,62650 1g41A 444 6.09e-09 c.37.1.20 32450 2chgA 226 1.27e-08 1um8A 376 1.29e-08 c.37.1.20 99580 1l8qA 324 2.24e-08 a.4.12.2,c.37.1.20 77809,77810 1nsf 273 2.61e-08 1d2nA 272 3.43e-08 c.37.1.20 32428 1jbkA 195 2.62e-07 c.37.1.20 71631 2rhmA 193 3.34e-07 1jr3A 373 3.59e-07 a.80.1.1,c.37.1.20 63245,63246 1njgA 250 3.67e-07 c.37.1.20 85785 2p65A 187 1.22e-06 1gvnB 287 1.25e-06 c.37.1.21 76354 1sxjE 354 1.84e-06 a.80.1.1,c.37.1.20 106089,106090 1fnnA 389 2.07e-06 a.4.5.11,c.37.1.20 16129,32426 1g8pA 350 2.82e-05 c.37.1.20 60376 1w5tA 412 2.83e-05 a.4.5.11,c.37.1.20 114255,114256 2z4sA 440 8.98e-05 1a5tA 334 0.000197 a.80.1.1,c.37.1.20 18450,32423 1a5t 334 0.000213 1ny6A 267 0.000362 c.37.1.20 92321 3bosA 242 0.001161 2gnoA 305 0.002334 a.80.1.1,c.37.1.20 135414,135415 2dvwB 83 0.004135 2fnaA 357 0.005119 a.4.5.11,c.37.1.20 133809,133810 1rkbA 173 0.008628 c.37.1.1 111854 2qgzA 308 0.01712 1y63A 184 0.02005 c.37.1.1 116494 2bjvA 265 0.02473 2ga8A 359 0.04737 1ye8A 178 0.07005 c.37.1.11 123010 1svmA 377 0.1035 c.37.1.20 112126 1viaA 175 0.1167 c.37.1.2 100754 2dznB 82 0.1245 1n25A 368 0.1450 c.37.1.20 85264 2p5tB 253 0.1547 1kagA 173 0.1587 c.37.1.2 72249 1zu4A 320 0.1643 1u94A 356 0.2093 c.37.1.11,d.48.1.1 107743,107744 2cdnA 201 0.2811 c.37.1.1 130289 2reb 352 0.3188 2rebA 352 0.3260 c.37.1.11,d.48.1.1 32282,38767 2iyvA 184 0.3426 c.37.1.2 137812 2gxaA 274 0.4105 1tueA 212 0.4567 c.37.1.20 107323 1g19A 350 0.4724 c.37.1.11,d.48.1.1 32284,38770 2fwrA 472 0.4861 c.37.1.19,c.37.1.19 134253,134254 1xp8A 366 0.4960 c.37.1.11,d.48.1.1 115735,115736 1jr3D 343 0.5235 a.80.1.1,c.37.1.20 63251,63252 1akeA 214 0.5931 c.37.1.1,g.41.2.1 31905,45185 2g1kA 176 0.5981 c.37.1.2 134519 1rz3A 201 0.6992 c.37.1.6 98132 2og2A 359 0.7146 1knqA 175 0.7286 c.37.1.17 72786 2px0A 296 0.7743 2hjgA 436 0.8343 1qf9A 194 0.9228 c.37.1.1 31848 1vmaA 306 0.9434 a.24.13.1,c.37.1.10 108887,108888 2yvuA 186 0.9480 2qy9A 309 1.012 2bwjA 199 1.041 1shkA 173 1.059 c.37.1.2 31932 1khtA 192 1.293 c.37.1.1 84401 3b9qA 302 1.312 1p9rA 418 1.444 c.37.1.11 94399 1ltqA 301 1.608 c.108.1.9,c.37.1.1 78208,78209 1u0jA 267 1.668 c.37.1.20 107546 3be4A 217 1.738 2c95A 196 1.744 2cvhA 220 1.757 2d2eA 250 1.810 2ax4A 198 1.811 3c8uA 208 1.882 1rj9A 304 1.954 a.24.13.1,c.37.1.10 97553,97554 1j8mF 297 2.067 a.24.13.1,c.37.1.10 62742,62743 2qt1A 207 2.122 2dr3A 247 2.139 1ly1A 181 2.161 c.37.1.1 74334 1ji0A 240 2.167 c.37.1.12 71665 1ukzA 203 2.201 c.37.1.1 31840 2rgxA 206 2.310 1zuhA 168 2.349 1kdoA 227 2.431 c.37.1.1 68478 1ak2A 233 2.506 c.37.1.1,g.41.2.1 31894,45195 2axpA 173 2.640 c.37.1.1 127497 1u9iA 519 2.664 c.37.1.11,c.37.1.11 119637,119638 1z6gA 218 2.787 2pt7A 330 3.015 1ki9A 192 3.015 c.37.1.1 84404 1g6hA 257 3.019 c.37.1.12 60318 1n0wA 243 3.072 c.37.1.11 79772 1ckeA 227 3.158 c.37.1.1 31846 1x6vA 630 3.329 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2eu8A 216 3.477 1nksA 194 3.486 c.37.1.1 31886 1e4yA 214 3.495 c.37.1.1,g.41.2.1 31901,45181 2qm8A 337 3.538 1zin 217 3.541 1tq4A 413 3.558 c.37.1.8 107201 1jpnA 296 3.657 a.24.13.1,c.37.1.10 67039,67040 1m7gA 211 3.854 c.37.1.4 78724 1zd9A 188 3.896 c.37.1.8 124938 2e87A 357 3.932 1p3jA 217 3.952 c.37.1.1,g.41.2.1 94022,94023 1ls1A 295 3.998 a.24.13.1,c.37.1.10 78170,78171 1htwA 158 4.053 c.37.1.18 71083 1e6cA 173 4.088 c.37.1.2 59296 1g6oA 330 4.242 c.37.1.11 32430 2pt5A 168 4.285 2bdtA 189 4.298 c.37.1.25 128344 1zinA 217 4.388 c.37.1.1,g.41.2.1 31915,45178 1oywA 523 4.407 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1qhxA 178 4.438 c.37.1.3 31936 3co5A 143 4.453 1oe0A 230 4.550 c.37.1.1 92788 1yqtA 538 4.570 1vplA 256 4.639 c.37.1.12 113966 1r8sA 164 4.690 c.37.1.8 97247 1gajA 257 4.739 c.37.1.12 60416 1fzqA 181 4.768 c.37.1.8 32060 1g291 372 4.813 1fl9A 161 4.859 c.37.1.18 70137 1akyA 220 5.114 c.37.1.1,g.41.2.1 31896,45197 1e69B 322 5.208 c.37.1.12 32377 2pezA 179 5.491 1oxsC 353 5.678 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 5.827 b.40.6.3,c.37.1.12 93715,93716 2pmkA 243 5.847 1ng1 294 5.971 1d6jA 211 6.012 c.37.1.4 31940 2ak3A 226 6.090 c.37.1.1,g.41.2.1 31892,45193 1mr3F 181 6.142 c.37.1.8 79422 2i1qA 322 6.287 a.60.4.1,c.37.1.11 136984,136985 3b85A 208 6.332 2oap1 511 6.373 2eyuA 261 6.442 1nlfA 279 6.723 c.37.1.11 85850 1yzqA 170 6.734 c.37.1.8 124286 1d2mA 665 6.749 c.37.1.19,c.37.1.19 32417,32418 2pcjA 224 6.776 1zm7A 230 6.781 2z43A 324 6.833 1esmA 316 6.940 c.37.1.6 31953 2ff7A 247 6.987 c.37.1.12 133377 1r0wA 286 7.068 c.37.1.12 96754 1yrbA 262 7.152 c.37.1.10 123915 1b0uA 262 7.160 c.37.1.12 32370 2ccjA 205 7.269 1ukz 203 7.368 2gzaA 361 7.519 2gdjA 264 7.683 c.37.1.11 135018 1pujA 282 7.772 c.37.1.8 88294 2grjA 192 7.891 1oixA 191 7.968 c.37.1.8 118710 1zd8A 227 8.034 1yzgA 179 8.096 c.37.1.8 124276 1z0jA 170 8.103 c.37.1.8 124319 1sq5A 308 8.447 c.37.1.6 105882 1o3yA 166 8.476 c.37.1.8 86618 1a7jA 290 8.633 c.37.1.6 31952 1tq6A 413 8.780 c.37.1.8 107202 1n3bA 216 8.910 c.37.1.1 79959 1mkyA 439 9.123 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1hurA 180 9.168 c.37.1.8 32052 1qzmA 94 9.259 c.37.1.20 96651 1jj7A 260 9.393 c.37.1.12 63114 1h65A 270 9.473 c.37.1.8 65640 2pjzA 263 9.536 2zejA 184 9.741 1z47A 355 10.00 1l2tA 235 10.02 c.37.1.12 73514 2bmeA 186 10.02 c.37.1.8 128790 1s4qA 228 10.11 c.37.1.1 98507 1cr1A 296 10.21 c.37.1.11 32286 2ixeA 271 10.41 1sviA 195 10.43 c.37.1.8 106048 1g8yA 279 10.64 c.37.1.11 32302 1xmiA 291 10.68 c.37.1.12 115489 1lnzA 342 11.14 b.117.1.1,c.37.1.8 78112,78113 2p67A 341 11.24 1uj2A 252 11.33 c.37.1.6 99452 1l7vC 249 11.34 c.37.1.12 73674 1kgdA 180 11.44 c.37.1.1 68582 1bifA 469 12.27 c.37.1.7,c.60.1.4 31961,34003 1ex7A 186 12.34 c.37.1.1 59537 1xrjA 261 12.46 c.37.1.6 122256 1hv8A 367 12.58 c.37.1.19,c.37.1.19 32405,32406 1z8fA 228 12.70 2g6bA 180 12.81 c.37.1.8 134701 1gky 187 13.54 1i2mA 216 13.75 c.37.1.8 61568 3bwdD 182 13.80 1lw7A 365 13.98 c.26.1.3,c.37.1.1 74295,74296 2f9lA 199 13.98 c.37.1.8 133166 1j8yF 297 14.15 a.24.13.1,c.37.1.10 62747,62748 2vp4A 230 14.19 1yksA 440 14.38 c.37.1.14,c.37.1.14 123561,123562 2dpyA 438 14.59 2iutA 574 14.70 2bbsA 290 14.82 1ek0A 170 15.43 c.37.1.8 32076 2b6hA 192 15.43 c.37.1.8 127994 2an9A 207 15.47 c.37.1.1 127037 2bifA 469 15.51 c.37.1.7,c.60.1.4 31963,34009 2qorA 204 15.51 2ffqA 171 15.78 2ze7A 253 16.09 2bmfA 451 16.09 c.37.1.14,c.37.1.14 128791,128792 2dykA 161 16.34 2it1A 362 16.42 1z06A 189 16.69 c.37.1.8 124301 1z2aA 168 16.87 c.37.1.8 124374 1wf3A 301 16.89 c.37.1.8,d.52.3.1 114574,114575 2yv5A 302 17.15 2a5dA 175 17.40 c.37.1.8 126172 2j41A 207 17.43 2i4iA 417 18.13 1sgwA 214 18.21 c.37.1.12 105541 2h58A 330 18.54 1kaoA 167 18.54 c.37.1.8 32014 1x3sA 195 18.89 c.37.1.8 121670 1m1nA 491 19.47 c.92.2.3 78417 3crrA 323 20.02 1x1rA 178 20.44 c.37.1.8 121595 2fz4A 237 20.57 c.37.1.19 134419 1z08A 170 20.88 c.37.1.8 124303 1bg2 325 21.14 1qhsA 178 21.25 c.37.1.3 31938 2a9kA 187 21.28 c.37.1.8 126442 2qi9C 249 21.32 1v5wA 343 21.92 c.37.1.11 108387 1d5cA 162 21.94 c.37.1.8 32021 2gcoA 201 22.26 1f9vA 347 23.08 c.37.1.9 59745 1ctqA 166 23.40 c.37.1.8 31965 1qguA 478 23.43 c.92.2.3 35625 1huqA 164 23.85 c.37.1.8 32020 3bfkA 181 24.29 1ihuA 589 24.39 c.37.1.10,c.37.1.10 62394,62395 2db3A 434 24.62 1m2oB 190 24.94 c.37.1.8 78485 1w1wA 430 25.05 c.37.1.12 114080 2qgnA 322 25.41 1cz7A 406 25.51 c.37.1.9 32194 1s96A 219 25.97 c.37.1.1 98740 2cbzA 237 26.04 1nf3A 195 26.47 c.37.1.8 85594 2a5yB 549 28.14 2hf9A 226 28.16 1a04A 215 28.52 a.4.6.2,c.23.1.1 16234,31089 2h17A 181 28.53 2f6rA 281 28.74 3tmkA 216 28.80 c.37.1.1 31920 2bzgA 232 29.35 c.66.1.36 129559 2q3hA 201 29.54 1u8zA 168 30.12 c.37.1.8 113212 1t9hA 307 30.46 b.40.4.5,c.37.1.8 112358,112359 2rexB 197 30.61 1oivA 191 30.69 c.37.1.8 93076 3bifA 468 30.92 c.37.1.7,c.60.1.4 31962,34008 1a1vA 476 31.48 c.37.1.14,c.37.1.14 32467,32468 2oblA 347 32.40 1m7bA 184 33.04 c.37.1.8 74572 2gf9A 189 33.64 3bh0A 315 33.68 1wmsA 177 33.98 c.37.1.8 109414 2a5jA 191 34.42 c.37.1.8 126175 1e9rA 437 34.58 c.37.1.11 64827 2jdiA 510 34.80 2ce2X 166 35.21 5tmpA 213 35.46 c.37.1.1 31931 1zj6A 187 35.75 c.37.1.8 125145 1h8eA 510 35.81 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1puiA 210 35.88 c.37.1.8 88292 1nrjB 218 36.22 c.37.1.8 86125 2ph5A 480 36.27 1ko7A 314 36.81 c.98.2.1,c.91.1.2 72797,72798 1znwA 207 36.86 c.37.1.1 125412 1fp4A 492 37.06 c.92.2.3 76187 1xtqA 177 37.39 c.37.1.8 122297 1r2qA 170 37.43 c.37.1.8 96874 2gk6A 624 38.68 2p5sA 199 38.73 2nq2C 253 40.73 2i3dA 249 41.09 3b6uA 372 41.90 1kl7A 514 42.02 c.79.1.1 72678 2vhjA 331 42.11 2h57A 190 42.56 2cxxA 190 43.48 c.37.1.8 131013 1e3jA 352 43.97 b.35.1.2,c.2.1.1 24765,29781 1umdA 367 44.18 c.36.1.11 99599 1p6xA 334 44.19 c.37.1.1 94195 2pzeA 229 44.85 1rifA 282 44.87 c.37.1.23 97507 1tx4B 178 45.09 c.37.1.8 32045 1skyB 502 45.50 a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 2atvA 196 45.78 c.37.1.8 127308 1vhtA 218 46.93 c.37.1.1 100700 1z15A 344 46.94 1auiB 169 47.36 a.39.1.5 17325 1e2kA 331 47.81 c.37.1.1 31854 1byuA 216 48.24 c.37.1.8 32032 1uj6A 227 48.75 c.124.1.4,d.58.40.1 107898,107899 1kolA 398 49.05 b.35.1.2,c.2.1.1 77474,77475 1qg4A 216 49.63 c.37.1.8 32035 1knxA 312 49.74 c.98.2.1,c.91.1.2 77459,77460 1uptA 171 51.14 c.37.1.8 99767 1of1A 376 52.44 c.37.1.1 103924 2bfdA 400 52.48 1s8fA 177 52.82 c.37.1.8 105370 2nr8A 358 53.00 2ew1A 201 53.54 c.37.1.8 132446 2hldD 478 54.11 1kgsA 225 54.55 a.4.6.1,c.23.1.1 68596,68597 1bg2A 325 55.54 c.37.1.9 32189 2qu8A 228 55.78 1w44A 331 56.32 c.37.1.11 114147 1egaA 301 57.24 c.37.1.8,d.52.3.1 32150,38836 2eryA 172 57.69 c.37.1.8 132306 1n1jA 93 58.09 a.22.1.3 79813 1e9eA 215 58.32 c.37.1.1 64810 1mh1 186 58.64 1kmqA 184 58.77 c.37.1.8 84412 1x88A 359 59.43 c.37.1.9 121797 1qh8A 478 59.93 c.92.2.3 35633 1w36D 608 60.02 c.37.1.19,c.37.1.19 114128,114129 1r4aA 165 60.22 c.37.1.8 96986 2bcgY 206 60.33 c.37.1.8 128285 1w85A 368 62.01 c.36.1.11 114335 1f48A 589 62.07 c.37.1.10,c.37.1.10 32280,32281 1nn5A 215 62.45 c.37.1.1 85892 1udxA 416 63.37 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1g8fA 511 63.73 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1f6bA 198 64.08 c.37.1.8 64986 1bif 469 64.20 1ukvY 206 64.58 c.37.1.8 107918 1mh1A 186 65.11 c.37.1.8 32002 1f2tA 149 65.13 c.37.1.12 32373 1t6nA 220 65.80 c.37.1.19 106576 2gj8A 172 68.43 c.37.1.8 135270 2r6fA 972 68.94 1br2A 791 69.32 b.34.3.1,c.37.1.9 24558,32155 2ccmA 191 69.44 1cll 148 70.65 1s1eA 224 70.86 a.39.1.5 112007 1jjvA 206 71.18 c.37.1.1 71698 1skyE 473 74.29 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 3borA 237 74.79 2c2hA 192 74.96 c.37.1.8 129668 2c8vA 288 79.60 c.37.1.10 130128 1cp2A 269 79.67 c.37.1.10 32269 1t0hB 224 80.19 c.37.1.1 106208 1gl6A 436 80.26 c.37.1.11 70259 1odfA 290 80.61 c.37.1.6 92782 2dpxA 174 80.92 4tmkA 213 81.33 c.37.1.1 31930 1ni4A 365 81.86 c.36.1.11 85728 2fn4A 181 81.91 c.37.1.8 133806 1e79D 482 81.96 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1ry6A 360 82.05 c.37.1.9 98090 1g3qA 237 82.66 c.37.1.10 60237 1vdzA 588 83.23 2mysB 166 84.11 a.39.1.5 17308 2ozgA 396 84.34 1qhiA 366 84.66 c.37.1.1 31860 2v1xA 591 85.26 1lkxA 697 85.74 c.37.1.9 73981 1jb1A 205 86.12 c.91.1.2 62832 3chy 128 86.37 1d0yA 761 86.67 b.34.3.1,c.37.1.9 24581,32178 1us8A 147 87.12 c.37.1.12 99859 2ki5A 366 87.18 c.37.1.1 31862 2kinA 238 87.25 c.37.1.9 32190 1j33A 335 88.10 c.39.1.1 77069 1dp4A 435 88.21 c.93.1.1 35710 1ggzA 148 89.18 a.39.1.5 70176 1e6mA 128 89.83 c.23.1.1 31039