# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e32A 458 1.53e-12 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1xwiA 322 1.83e-12 3b9pA 297 3.34e-12 1lv7A 257 4.20e-12 c.37.1.20 78232 2c9oA 456 2.87e-10 1in6A 334 3.78e-10 a.4.5.11,c.37.1.20 62601,62602 1hqcA 324 5.53e-10 a.4.5.11,c.37.1.20 16127,32424 1in4A 334 7.56e-10 a.4.5.11,c.37.1.20 62597,62598 1sxjA 511 1.08e-09 a.80.1.1,c.37.1.20 106081,106082 1sxjC 340 1.31e-09 a.80.1.1,c.37.1.20 106085,106086 1ofhA 310 2.03e-09 c.37.1.20 86948 1do0A 442 3.58e-09 c.37.1.20 32432 1iqpA 327 3.95e-09 a.80.1.1,c.37.1.20 62649,62650 1g41A 444 6.40e-09 c.37.1.20 32450 2chgA 226 7.45e-09 1nsf 273 1.51e-08 1d2nA 272 1.95e-08 c.37.1.20 32428 1um8A 376 2.10e-08 c.37.1.20 99580 1l8qA 324 3.47e-08 a.4.12.2,c.37.1.20 77809,77810 2rhmA 193 1.99e-07 1jbkA 195 2.03e-07 c.37.1.20 71631 1njgA 250 3.11e-07 c.37.1.20 85785 1jr3A 373 5.35e-07 a.80.1.1,c.37.1.20 63245,63246 2p65A 187 6.72e-07 1gvnB 287 8.78e-07 c.37.1.21 76354 1fnnA 389 1.79e-06 a.4.5.11,c.37.1.20 16129,32426 1sxjE 354 3.71e-06 a.80.1.1,c.37.1.20 106089,106090 1g8pA 350 3.00e-05 c.37.1.20 60376 1w5tA 412 3.03e-05 a.4.5.11,c.37.1.20 114255,114256 2z4sA 440 0.000144 1a5t 334 0.000189 1a5tA 334 0.000196 a.80.1.1,c.37.1.20 18450,32423 1ny6A 267 0.000534 c.37.1.20 92321 2gnoA 305 0.000676 a.80.1.1,c.37.1.20 135414,135415 3bosA 242 0.001629 2dvwB 83 0.003697 2fnaA 357 0.005077 a.4.5.11,c.37.1.20 133809,133810 1rkbA 173 0.005258 c.37.1.1 111854 2qgzA 308 0.009292 1y63A 184 0.01266 c.37.1.1 116494 2ga8A 359 0.01330 2bjvA 265 0.01585 1ye8A 178 0.03643 c.37.1.11 123010 1svmA 377 0.08874 c.37.1.20 112126 1zu4A 320 0.1115 2dznB 82 0.1332 2rebA 352 0.1377 c.37.1.11,d.48.1.1 32282,38767 1kagA 173 0.1492 c.37.1.2 72249 2p5tB 253 0.1620 1viaA 175 0.1770 c.37.1.2 100754 1n25A 368 0.1886 c.37.1.20 85264 2reb 352 0.2561 1g19A 350 0.2668 c.37.1.11,d.48.1.1 32284,38770 2og2A 359 0.2882 1xp8A 366 0.3191 c.37.1.11,d.48.1.1 115735,115736 2cdnA 201 0.3352 c.37.1.1 130289 1u94A 356 0.3358 c.37.1.11,d.48.1.1 107743,107744 2iyvA 184 0.4560 c.37.1.2 137812 1knqA 175 0.5450 c.37.1.17 72786 1jr3D 343 0.5668 a.80.1.1,c.37.1.20 63251,63252 2fwrA 472 0.5802 c.37.1.19,c.37.1.19 134253,134254 1tueA 212 0.6020 c.37.1.20 107323 3b9qA 302 0.6050 1rj9A 304 0.6325 a.24.13.1,c.37.1.10 97553,97554 2hjgA 436 0.6421 1p9rA 418 0.6588 c.37.1.11 94399 2g1kA 176 0.7124 c.37.1.2 134519 1ukzA 203 0.7492 c.37.1.1 31840 1vmaA 306 0.7557 a.24.13.1,c.37.1.10 108887,108888 2qy9A 309 0.7760 2yvuA 186 0.7794 1u0jA 267 0.8772 c.37.1.20 107546 2gxaA 274 0.8865 1shkA 173 0.9121 c.37.1.2 31932 2bwjA 199 0.9622 1oxxK 353 0.9872 b.40.6.3,c.37.1.12 93715,93716 1oxsC 353 1.001 b.40.6.3,c.37.1.12 87519,87520 1qf9A 194 1.063 c.37.1.1 31848 1ltqA 301 1.250 c.108.1.9,c.37.1.1 78208,78209 2d2eA 250 1.269 1yqtA 538 1.344 2dr3A 247 1.363 1akeA 214 1.397 c.37.1.1,g.41.2.1 31905,45185 1j8mF 297 1.411 a.24.13.1,c.37.1.10 62742,62743 2qt1A 207 1.439 2c95A 196 1.519 2ax4A 198 1.574 2pt7A 330 1.575 1rz3A 201 1.582 c.37.1.6 98132 1khtA 192 1.592 c.37.1.1 84401 1g291 372 1.605 2e87A 357 1.663 2cvhA 220 1.706 2px0A 296 1.821 1ji0A 240 1.889 c.37.1.12 71665 1r8sA 164 1.992 c.37.1.8 97247 2oap1 511 2.006 2qm8A 337 2.039 1oywA 523 2.041 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1vplA 256 2.054 c.37.1.12 113966 3co5A 143 2.099 1g6hA 257 2.133 c.37.1.12 60318 1sviA 195 2.177 c.37.1.8 106048 1r0wA 286 2.250 c.37.1.12 96754 2axpA 173 2.273 c.37.1.1 127497 1zuhA 168 2.314 1ly1A 181 2.349 c.37.1.1 74334 1u9iA 519 2.349 c.37.1.11,c.37.1.11 119637,119638 1kdoA 227 2.354 c.37.1.1 68478 1jpnA 296 2.357 a.24.13.1,c.37.1.10 67039,67040 3be4A 217 2.481 1mr3F 181 2.545 c.37.1.8 79422 1e6cA 173 2.545 c.37.1.2 59296 3c8uA 208 2.654 1e69B 322 2.657 c.37.1.12 32377 2i1qA 322 2.702 a.60.4.1,c.37.1.11 136984,136985 1fzqA 181 2.726 c.37.1.8 32060 1g6oA 330 2.894 c.37.1.11 32430 1nksA 194 2.899 c.37.1.1 31886 1z6gA 218 2.933 1ckeA 227 3.026 c.37.1.1 31846 1ls1A 295 3.059 a.24.13.1,c.37.1.10 78170,78171 2bdtA 189 3.101 c.37.1.25 128344 1ukz 203 3.275 2pcjA 224 3.446 1x6vA 630 3.476 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1zd9A 188 3.501 c.37.1.8 124938 2gzaA 361 3.521 1ki9A 192 3.575 c.37.1.1 84404 1g8yA 279 3.613 c.37.1.11 32302 1esmA 316 3.649 c.37.1.6 31953 1gajA 257 3.655 c.37.1.12 60416 1yrbA 262 3.720 c.37.1.10 123915 1jj7A 260 3.789 c.37.1.12 63114 1xmiA 291 3.867 c.37.1.12 115489 1z47A 355 3.948 1b0uA 262 4.070 c.37.1.12 32370 1pujA 282 4.127 c.37.1.8 88294 1l2tA 235 4.134 c.37.1.12 73514 1m7gA 211 4.318 c.37.1.4 78724 1h65A 270 4.319 c.37.1.8 65640 1ak2A 233 4.380 c.37.1.1,g.41.2.1 31894,45195 1zd8A 227 4.482 1nlfA 279 4.572 c.37.1.11 85850 2ccjA 205 4.596 1zin 217 4.739 2gdjA 264 4.920 c.37.1.11 135018 2db3A 434 4.967 2pezA 179 4.984 2pmkA 243 5.025 2ixeA 271 5.094 2rgxA 206 5.184 2i4iA 417 5.315 2eu8A 216 5.320 1o3yA 166 5.323 c.37.1.8 86618 1n0wA 243 5.416 c.37.1.11 79772 1ng1 294 5.646 1sq5A 308 5.736 c.37.1.6 105882 1zm7A 230 5.751 2ff7A 247 5.812 c.37.1.12 133377 1tq4A 413 5.840 c.37.1.8 107201 1oe0A 230 5.864 c.37.1.1 92788 1hv8A 367 5.895 c.37.1.19,c.37.1.19 32405,32406 1d2mA 665 5.975 c.37.1.19,c.37.1.19 32417,32418 2fz4A 237 6.037 c.37.1.19 134419 1tq6A 413 6.099 c.37.1.8 107202 2it1A 362 6.222 1qhxA 178 6.230 c.37.1.3 31936 2dpyA 438 6.381 2nq2C 253 6.790 1n3bA 216 6.830 c.37.1.1 79959 1ex7A 186 6.838 c.37.1.1 59537 1zinA 217 6.892 c.37.1.1,g.41.2.1 31915,45178 1oixA 191 6.937 c.37.1.8 118710 2cbzA 237 7.084 1j8yF 297 7.193 a.24.13.1,c.37.1.10 62747,62748 1gky 187 7.202 2ak3A 226 7.274 c.37.1.1,g.41.2.1 31892,45193 1hurA 180 7.569 c.37.1.8 32052 1sgwA 214 7.570 c.37.1.12 105541 2z43A 324 7.595 2pt5A 168 7.675 1s4qA 228 7.717 c.37.1.1 98507 2qorA 204 7.717 3b85A 208 7.747 1akyA 220 7.803 c.37.1.1,g.41.2.1 31896,45197 1p3jA 217 7.900 c.37.1.1,g.41.2.1 94022,94023 1puiA 210 8.186 c.37.1.8 88292 1d6jA 211 8.190 c.37.1.4 31940 2pjzA 263 8.422 1cr1A 296 8.638 c.37.1.11 32286 1wf3A 301 8.660 c.37.1.8,d.52.3.1 114574,114575 2b6hA 192 9.136 c.37.1.8 127994 2p67A 341 9.264 1yzgA 179 9.349 c.37.1.8 124276 1nrjB 218 9.441 c.37.1.8 86125 2grjA 192 9.586 1z8fA 228 9.821 1qzmA 94 9.824 c.37.1.20 96651 1kgdA 180 10.12 c.37.1.1 68582 1yzqA 170 10.18 c.37.1.8 124286 1mkyA 439 10.25 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1htwA 158 10.55 c.37.1.18 71083 2g6bA 180 11.22 c.37.1.8 134701 1t9hA 307 11.45 b.40.4.5,c.37.1.8 112358,112359 1z0jA 170 11.76 c.37.1.8 124319 1e4yA 214 12.01 c.37.1.1,g.41.2.1 31901,45181 1l7vC 249 12.26 c.37.1.12 73674 2oblA 347 12.30 2gk6A 624 12.49 2cxxA 190 12.50 c.37.1.8 131013 2qi9C 249 12.79 1a7jA 290 12.90 c.37.1.6 31952 1uj2A 252 12.96 c.37.1.6 99452 2yv5A 302 13.32 1zj6A 187 13.44 c.37.1.8 125145 1s96A 219 13.60 c.37.1.1 98740 2bbsA 290 13.64 2bmeA 186 13.74 c.37.1.8 128790 2an9A 207 13.78 c.37.1.1 127037 2f9lA 199 13.89 c.37.1.8 133166 2iutA 574 14.09 1fl9A 161 14.48 c.37.1.18 70137 1z2aA 168 14.58 c.37.1.8 124374 1x3sA 195 14.73 c.37.1.8 121670 2a5dA 175 15.03 c.37.1.8 126172 2vhjA 331 15.43 2zejA 184 15.49 1m2oB 190 15.99 c.37.1.8 78485 2h17A 181 16.12 2vp4A 230 16.53 2j41A 207 16.55 1ek0A 170 16.58 c.37.1.8 32076 2eyuA 261 16.60 2qu8A 228 16.69 1ko7A 314 16.74 c.98.2.1,c.91.1.2 72797,72798 1z08A 170 16.97 c.37.1.8 124303 1t6nA 220 17.61 c.37.1.19 106576 2bmfA 451 17.62 c.37.1.14,c.37.1.14 128791,128792 2pzeA 229 17.62 1yksA 440 18.26 c.37.1.14,c.37.1.14 123561,123562 1f6bA 198 18.30 c.37.1.8 64986 2f6rA 281 18.41 1w1wA 430 19.15 c.37.1.12 114080 1t0hB 224 19.97 c.37.1.1 106208 3tmkA 216 20.02 c.37.1.1 31920 2ze7A 253 20.17 2ffqA 171 20.33 1lnzA 342 20.34 b.117.1.1,c.37.1.8 78112,78113 1m1nA 491 20.51 c.92.2.3 78417 1udxA 416 20.65 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2a5yB 549 20.83 1lw7A 365 20.85 c.26.1.3,c.37.1.1 74295,74296 1rrvA 416 21.05 c.87.1.5 105083 1w44A 331 21.22 c.37.1.11 114147 1rifA 282 21.29 c.37.1.23 97507 1a04A 215 21.36 a.4.6.2,c.23.1.1 16234,31089 2hldD 478 21.38 2a9kA 187 21.43 c.37.1.8 126442 1bifA 469 21.90 c.37.1.7,c.60.1.4 31961,34003 2va8A 715 22.03 3borA 237 22.31 1v5wA 343 22.42 c.37.1.11 108387 1e79D 482 22.50 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1skyB 502 23.12 a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 3bwdD 182 23.27 3crrA 323 23.30 1e3jA 352 23.40 b.35.1.2,c.2.1.1 24765,29781 1x1rA 178 23.64 c.37.1.8 121595 1skyE 473 24.02 a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 2hf9A 226 24.22 2r6fA 972 24.38 1wrbA 253 24.43 c.37.1.19 121192 1w36D 608 25.48 c.37.1.19,c.37.1.19 114128,114129 3bfkA 181 27.47 1egaA 301 27.48 c.37.1.8,d.52.3.1 32150,38836 2bifA 469 27.81 c.37.1.7,c.60.1.4 31963,34009 2gcoA 201 27.87 1g8fA 511 28.31 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1u8zA 168 28.68 c.37.1.8 113212 2gj8A 172 28.71 c.37.1.8 135270 2atvA 196 28.73 c.37.1.8 127308 3berA 249 28.83 2jdiA 510 29.20 1e9rA 437 29.35 c.37.1.11 64827 1jb1A 205 29.41 c.91.1.2 62832 1oivA 191 29.87 c.37.1.8 93076 1umdA 367 30.15 c.36.1.11 99599 1z06A 189 30.22 c.37.1.8 124301 1xrjA 261 30.38 c.37.1.6 122256 2ce2X 166 30.88 1znwA 207 31.03 c.37.1.1 125412 1uptA 171 31.65 c.37.1.8 99767 1d5cA 162 33.11 c.37.1.8 32021 1hyqA 263 33.49 c.37.1.10 61412 5tmpA 213 33.76 c.37.1.1 31931 1kaoA 167 34.11 c.37.1.8 32014 2q3hA 201 34.20 1knxA 312 34.57 c.98.2.1,c.91.1.2 77459,77460 2qgnA 322 34.67 2jdiD 482 34.67 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1huqA 164 34.85 c.37.1.8 32020 1h8eA 510 35.10 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 2p5sA 199 35.11 1r4aA 165 35.85 c.37.1.8 96986 1kl7A 514 36.59 c.79.1.1 72678 3c5vA 316 36.63 2gf9A 189 36.77 1r2qA 170 37.07 c.37.1.8 96874 1ni4A 365 37.72 c.36.1.11 85728 2i3dA 249 38.57 1qh8A 478 38.77 c.92.2.3 35633 2eryA 172 39.51 c.37.1.8 132306 2h58A 330 39.69 1qhsA 178 40.10 c.37.1.3 31938 1p6xA 334 40.17 c.37.1.1 94195 2o5vA 359 40.97 3bh0A 315 41.05 1vhtA 218 41.55 c.37.1.1 100700 1ctqA 166 41.94 c.37.1.8 31965 2h57A 190 42.73 1f2tA 149 42.73 c.37.1.12 32373 1w85A 368 42.76 c.36.1.11 114335 1ihuA 589 42.87 c.37.1.10,c.37.1.10 62394,62395 2v1xA 591 44.23 1gkuB 1054 44.84 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 1nf3A 195 45.62 c.37.1.8 85594 3cu5A 141 45.94 2a5jA 191 47.23 c.37.1.8 126175 2dpxA 174 47.60 2rexB 197 47.81 1c9kB 180 49.57 c.37.1.11 32364 1qdeA 224 49.76 c.37.1.19 32410 1z15A 344 50.11 4tmkA 213 50.21 c.37.1.1 31930 1xtqA 177 50.64 c.37.1.8 122297 1f9vA 347 51.41 c.37.1.9 59745 3b6eA 216 52.04 1i2mA 216 52.63 c.37.1.8 61568 2ew1A 201 52.82 c.37.1.8 132446 2bfdA 400 52.87 1q0uA 219 53.17 c.37.1.19 95512 2dykA 161 53.73 2gjsA 176 54.01 c.37.1.8 135287 1vdzA 588 54.46 1kgsA 225 56.25 a.4.6.1,c.23.1.1 68596,68597 1ukvY 206 56.77 c.37.1.8 107918 1fp4A 492 56.82 c.92.2.3 76187 1bg2 325 57.01 1of1A 376 57.69 c.37.1.1 103924 1a1vA 476 58.10 c.37.1.14,c.37.1.14 32467,32468 2bzgA 232 58.57 c.66.1.36 129559 1heiA 451 59.54 c.37.1.14,c.37.1.14 32463,32464 1wmsA 177 59.66 c.37.1.8 109414 1s1eA 224 59.69 a.39.1.5 112007 1qvaA 223 61.00 c.37.1.19 32411 2rjnA 154 61.36 1nn5A 215 61.41 c.37.1.1 85892 2ph5A 480 61.60 1qguA 478 64.46 c.92.2.3 35625 2hsjA 214 65.91 2ff4A 388 66.86 a.4.6.1,a.118.8.3,b.26.1.2 133367,133368,133369 1e9eA 215 67.50 c.37.1.1 64810 1dfoA 417 68.40 c.67.1.4 34480 1z63A 500 68.65 c.37.1.19,c.37.1.19 124502,124503 1m7bA 184 70.22 c.37.1.8 74572 1kshA 186 71.70 c.37.1.8 72914 1s8fA 177 72.38 c.37.1.8 105370 1cp2A 269 72.74 c.37.1.10 32269 1d2rA 326 73.95 c.26.1.1 31572 1srrA 124 76.08 c.23.1.1 31110 1e2kA 331 76.19 c.37.1.1 31854 3bifA 468 76.29 c.37.1.7,c.60.1.4 31962,34008 2bm0A 691 78.75 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 2mysB 166 78.77 a.39.1.5 17308 2bcgY 206 79.36 c.37.1.8 128285 1xewY 172 81.22 1mb3A 124 81.65 c.23.1.1 78907 1p5zB 263 82.57 c.37.1.1 87815 2plrA 213 82.88 1tx4B 178 83.85 c.37.1.8 32045 1e6mA 128 83.94 c.23.1.1 31039 2pbrA 195 85.80 1lkxA 697 86.02 c.37.1.9 73981 2q02A 272 86.38 1d2rB 326 87.28 c.26.1.1 31573 1gl6A 436 87.36 c.37.1.11 70259 2b2nA 344 88.21 c.37.1.19 127710 1bif 469 88.89