# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xwiA 322 3.26e-12 3b9pA 297 4.07e-12 1e32A 458 4.71e-12 b.52.2.3,c.37.1.20,d.31.1.1 59183,59184,59185 1lv7A 257 7.19e-12 c.37.1.20 78232 1hqcA 324 9.60e-10 a.4.5.11,c.37.1.20 16127,32424 1in6A 334 1.27e-09 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 1.84e-09 a.4.5.11,c.37.1.20 62597,62598 2c9oA 456 4.85e-09 1sxjC 340 5.16e-09 a.80.1.1,c.37.1.20 106085,106086 1ofhA 310 8.52e-09 c.37.1.20 86948 1sxjA 511 1.08e-08 a.80.1.1,c.37.1.20 106081,106082 1g41A 444 1.61e-08 c.37.1.20 32450 1iqpA 327 1.82e-08 a.80.1.1,c.37.1.20 62649,62650 1do0A 442 1.83e-08 c.37.1.20 32432 2chgA 226 3.26e-08 1um8A 376 6.64e-08 c.37.1.20 99580 1nsf 273 7.09e-08 1d2nA 272 9.41e-08 c.37.1.20 32428 1l8qA 324 2.57e-07 a.4.12.2,c.37.1.20 77809,77810 1jbkA 195 3.10e-07 c.37.1.20 71631 1njgA 250 6.37e-07 c.37.1.20 85785 1jr3A 373 1.38e-06 a.80.1.1,c.37.1.20 63245,63246 2p65A 187 1.54e-06 2rhmA 193 2.79e-06 1sxjE 354 2.82e-06 a.80.1.1,c.37.1.20 106089,106090 1gvnB 287 2.05e-05 c.37.1.21 76354 1fnnA 389 2.63e-05 a.4.5.11,c.37.1.20 16129,32426 1w5tA 412 7.10e-05 a.4.5.11,c.37.1.20 114255,114256 1g8pA 350 0.000244 c.37.1.20 60376 2z4sA 440 0.000380 1a5tA 334 0.000381 a.80.1.1,c.37.1.20 18450,32423 1a5t 334 0.000424 1ny6A 267 0.001101 c.37.1.20 92321 3bosA 242 0.002598 2gnoA 305 0.006489 a.80.1.1,c.37.1.20 135414,135415 2dvwB 83 0.007823 2qgzA 308 0.01621 2fnaA 357 0.02337 a.4.5.11,c.37.1.20 133809,133810 1rkbA 173 0.06631 c.37.1.1 111854 1ye8A 178 0.07179 c.37.1.11 123010 2bjvA 265 0.07570 2ga8A 359 0.1696 1y63A 184 0.1761 c.37.1.1 116494 2dznB 82 0.3922 1u94A 356 0.4334 c.37.1.11,d.48.1.1 107743,107744 1n25A 368 0.4597 c.37.1.20 85264 1kagA 173 0.4678 c.37.1.2 72249 2reb 352 0.5005 1g19A 350 0.5742 c.37.1.11,d.48.1.1 32284,38770 1svmA 377 0.6504 c.37.1.20 112126 2rebA 352 0.6563 c.37.1.11,d.48.1.1 32282,38767 1viaA 175 0.6576 c.37.1.2 100754 2p5tB 253 0.6891 1xp8A 366 1.061 c.37.1.11,d.48.1.1 115735,115736 1p9rA 418 1.156 c.37.1.11 94399 2cdnA 201 1.517 c.37.1.1 130289 1vmaA 306 1.661 a.24.13.1,c.37.1.10 108887,108888 2yvuA 186 1.813 2dr3A 247 2.192 1jr3D 343 2.352 a.80.1.1,c.37.1.20 63251,63252 2g1kA 176 2.389 c.37.1.2 134519 1knqA 175 2.490 c.37.1.17 72786 1ukzA 203 2.545 c.37.1.1 31840 2qy9A 309 2.733 1tueA 212 2.771 c.37.1.20 107323 2iyvA 184 2.830 c.37.1.2 137812 1zu4A 320 2.877 3b9qA 302 2.896 2gxaA 274 2.913 2hjgA 436 3.057 1u9iA 519 3.060 c.37.1.11,c.37.1.11 119637,119638 1rj9A 304 3.279 a.24.13.1,c.37.1.10 97553,97554 2ax4A 198 3.301 1g6oA 330 3.328 c.37.1.11 32430 1u0jA 267 3.488 c.37.1.20 107546 1j8mF 297 3.516 a.24.13.1,c.37.1.10 62742,62743 2og2A 359 3.686 2pt7A 330 3.792 1khtA 192 4.073 c.37.1.1 84401 1n0wA 243 4.099 c.37.1.11 79772 1shkA 173 4.154 c.37.1.2 31932 2e87A 357 4.188 2px0A 296 4.742 2i1qA 322 4.857 a.60.4.1,c.37.1.11 136984,136985 1rz3A 201 4.989 c.37.1.6 98132 1akeA 214 5.089 c.37.1.1,g.41.2.1 31905,45185 2cvhA 220 5.236 2qt1A 207 5.434 2bwjA 199 5.646 1jpnA 296 6.027 a.24.13.1,c.37.1.10 67039,67040 1x6vA 630 6.165 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2c95A 196 6.185 1qf9A 194 6.186 c.37.1.1 31848 2z43A 324 6.190 1ukz 203 6.278 2pezA 179 6.809 2gdjA 264 7.008 c.37.1.11 135018 1h65A 270 7.056 c.37.1.8 65640 1v5wA 343 7.333 c.37.1.11 108387 2oap1 511 7.473 1nksA 194 8.085 c.37.1.1 31886 1g8yA 279 8.395 c.37.1.11 32302 1nlfA 279 8.572 c.37.1.11 85850 1kdoA 227 9.052 c.37.1.1 68478 1m7gA 211 9.068 c.37.1.4 78724 3b85A 208 9.132 1pujA 282 9.179 c.37.1.8 88294 1sviA 195 9.576 c.37.1.8 106048 3be4A 217 9.658 2axpA 173 9.745 c.37.1.1 127497 2rgxA 206 9.909 2pt5A 168 10.26 1ls1A 295 10.27 a.24.13.1,c.37.1.10 78170,78171 1zuhA 168 10.44 2d2eA 250 10.74 3c8uA 208 10.82 1ckeA 227 10.89 c.37.1.1 31846 2eyuA 261 10.96 2gzaA 361 11.28 1z6gA 218 11.43 2bdtA 189 12.27 c.37.1.25 128344 1zd8A 227 12.87 1puiA 210 13.11 c.37.1.8 88292 1zin 217 13.72 1cr1A 296 13.75 c.37.1.11 32286 1qhxA 178 14.06 c.37.1.3 31936 1p3jA 217 14.84 c.37.1.1,g.41.2.1 94022,94023 1ltqA 301 15.06 c.108.1.9,c.37.1.1 78208,78209 1ly1A 181 15.32 c.37.1.1 74334 2qm8A 337 15.73 1ak2A 233 16.22 c.37.1.1,g.41.2.1 31894,45195 1gajA 257 17.12 c.37.1.12 60416 1fl9A 161 17.21 c.37.1.18 70137 1ki9A 192 17.63 c.37.1.1 84404 1yrbA 262 17.78 c.37.1.10 123915 1ng1 294 17.80 1r0wA 286 18.41 c.37.1.12 96754 3bh0A 315 18.48 2ixeA 271 18.71 1g6hA 257 19.16 c.37.1.12 60318 2p67A 341 19.24 2iutA 574 19.45 3co5A 143 19.71 1d6jA 211 19.85 c.37.1.4 31940 1e69B 322 20.08 c.37.1.12 32377 2ff7A 247 20.31 c.37.1.12 133377 1mr3F 181 20.46 c.37.1.8 79422 2yv5A 302 20.54 1e4yA 214 20.76 c.37.1.1,g.41.2.1 31901,45181 1tq4A 413 21.44 c.37.1.8 107201 2eu8A 216 21.46 1htwA 158 21.70 c.37.1.18 71083 1bifA 469 22.09 c.37.1.7,c.60.1.4 31961,34003 2dpyA 438 22.12 2grjA 192 22.73 1yqtA 538 23.27 2fz4A 237 23.38 c.37.1.19 134419 1e6cA 173 23.70 c.37.1.2 59296 1zinA 217 23.75 c.37.1.1,g.41.2.1 31915,45178 2pmkA 243 24.23 2fwrA 472 25.09 c.37.1.19,c.37.1.19 134253,134254 1ko7A 314 25.31 c.98.2.1,c.91.1.2 72797,72798 2pcjA 224 25.42 1d2mA 665 25.77 c.37.1.19,c.37.1.19 32417,32418 1ji0A 240 25.92 c.37.1.12 71665 1tq6A 413 26.43 c.37.1.8 107202 2ccjA 205 26.79 1oixA 191 27.24 c.37.1.8 118710 1uj2A 252 27.42 c.37.1.6 99452 2ak3A 226 27.67 c.37.1.1,g.41.2.1 31892,45193 1oxsC 353 27.83 b.40.6.3,c.37.1.12 87519,87520 2oblA 347 28.41 1sq5A 308 28.95 c.37.1.6 105882 1nrjB 218 29.76 c.37.1.8 86125 1xmiA 291 30.01 c.37.1.12 115489 1akyA 220 30.45 c.37.1.1,g.41.2.1 31896,45197 1qzmA 94 31.06 c.37.1.20 96651 1j8yF 297 31.51 a.24.13.1,c.37.1.10 62747,62748 2f9lA 199 32.64 c.37.1.8 133166 1oxxK 353 34.14 b.40.6.3,c.37.1.12 93715,93716 1lw7A 365 34.44 c.26.1.3,c.37.1.1 74295,74296 2hf9A 226 35.20 2an9A 207 35.21 c.37.1.1 127037 1z0jA 170 35.32 c.37.1.8 124319 1yzqA 170 35.43 c.37.1.8 124286 2bifA 469 35.94 c.37.1.7,c.60.1.4 31963,34009 1fzqA 181 37.10 c.37.1.8 32060 2cbzA 237 37.40 1b0uA 262 37.74 c.37.1.12 32370 1jj7A 260 38.11 c.37.1.12 63114 1wf3A 301 38.30 c.37.1.8,d.52.3.1 114574,114575 1zd9A 188 38.53 c.37.1.8 124938 2g6bA 180 39.20 c.37.1.8 134701 1g291 372 40.28 1oe0A 230 42.05 c.37.1.1 92788 1s4qA 228 42.40 c.37.1.1 98507 1j33A 335 42.50 c.39.1.1 77069 1z8fA 228 42.71 1hurA 180 43.30 c.37.1.8 32052 1kgdA 180 43.31 c.37.1.1 68582 1w44A 331 43.70 c.37.1.11 114147 1oywA 523 44.62 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2bbsA 290 44.83 2bmeA 186 45.70 c.37.1.8 128790 2vhjA 331 47.09 1r8sA 164 47.93 c.37.1.8 97247 1gky 187 47.95 2hldD 478 49.59 2gk6A 624 51.97 2it1A 362 52.63 2pjzA 263 52.74 2dykA 161 53.01 1rifA 282 53.32 c.37.1.23 97507 1xrjA 261 53.92 c.37.1.6 122256 3bwdD 182 53.98 1oivA 191 54.05 c.37.1.8 93076 1n3bA 216 55.13 c.37.1.1 79959 1wx1A 335 56.37 1zm7A 230 57.20 1knxA 312 57.59 c.98.2.1,c.91.1.2 77459,77460 2i3dA 249 58.52 1esmA 316 58.61 c.37.1.6 31953 1yzgA 179 59.40 c.37.1.8 124276 3crrA 323 61.36 1skyB 502 62.96 a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 1vplA 256 63.04 c.37.1.12 113966 2ffqA 171 63.70 2qorA 204 63.79 2j41A 207 64.65 3c5vA 316 65.28 1ek0A 170 66.26 c.37.1.8 32076 2pzeA 229 67.23 2q3hA 201 67.62 1n1jA 93 67.89 a.22.1.3 79813 1l7vC 249 68.14 c.37.1.12 73674 1z08A 170 68.77 c.37.1.8 124303 2gj8A 172 69.56 c.37.1.8 135270 1z2aA 168 71.59 c.37.1.8 124374 2b6hA 192 72.32 c.37.1.8 127994 1e79D 482 74.58 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1l5oA 356 74.61 c.39.1.1 77711 1x3sA 195 74.81 c.37.1.8 121670 1z06A 189 74.83 c.37.1.8 124301 1z63A 500 76.79 c.37.1.19,c.37.1.19 124502,124503 1nf3A 195 78.77 c.37.1.8 85594 1r2qA 170 79.32 c.37.1.8 96874 1sgwA 214 80.82 c.37.1.12 105541 1br2A 791 81.72 b.34.3.1,c.37.1.9 24558,32155 1d0vA 356 82.17 c.39.1.1 32476 3tmkA 216 82.28 c.37.1.1 31920 1w36D 608 82.88 c.37.1.19,c.37.1.19 114128,114129 1l2tA 235 83.53 c.37.1.12 73514 2rexB 197 85.04 2gf9A 189 85.07 1lnzA 342 86.66 b.117.1.1,c.37.1.8 78112,78113 3bifA 468 87.09 c.37.1.7,c.60.1.4 31962,34008 1a7jA 290 88.72 c.37.1.6 31952 1qhsA 178 89.07 c.37.1.3 31938 1lkxA 697 89.35 c.37.1.9 73981