# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 1.73e-07 1lv7A 257 2.97e-06 c.37.1.20 78232 1in4A 334 8.71e-06 a.4.5.11,c.37.1.20 62597,62598 1in6A 334 9.93e-06 a.4.5.11,c.37.1.20 62601,62602 1d2nA 272 2.02e-05 c.37.1.20 32428 2chgA 226 2.04e-05 1sxjC 340 2.38e-05 a.80.1.1,c.37.1.20 106085,106086 3bosA 242 3.51e-05 1njgA 250 3.51e-05 c.37.1.20 85785 1sxjA 511 4.39e-05 a.80.1.1,c.37.1.20 106081,106082 2r44A 331 4.83e-05 1g41A 444 7.45e-05 c.37.1.20 32450 1fnnA 389 9.60e-05 a.4.5.11,c.37.1.20 16129,32426 1sxjE 354 0.000129 a.80.1.1,c.37.1.20 106089,106090 2bjvA 265 0.000143 1w5tA 412 0.000146 a.4.5.11,c.37.1.20 114255,114256 1g8pA 350 0.000289 c.37.1.20 60376 1a5t 334 0.000503 2z4sA 440 0.000611 1lw7A 365 0.000643 c.26.1.3,c.37.1.1 74295,74296 2c9oA 456 0.000793 1u0jA 267 0.000981 c.37.1.20 107546 2gxaA 274 0.001411 2fnaA 357 0.001653 a.4.5.11,c.37.1.20 133809,133810 1jbkA 195 0.002451 c.37.1.20 71631 1gvnB 287 0.003744 c.37.1.21 76354 1a5tA 334 0.007655 a.80.1.1,c.37.1.20 18450,32423 2p65A 187 0.01100 1tueA 212 0.01241 c.37.1.20 107323 2gnoA 305 0.02310 a.80.1.1,c.37.1.20 135414,135415 2qgzA 308 0.03845 2p5tB 253 0.04603 1e6cA 173 0.09319 c.37.1.2 59296 3co5A 143 0.2122 2iyvA 184 0.2124 c.37.1.2 137812 1ltqA 301 0.2537 c.108.1.9,c.37.1.1 78208,78209 1qhxA 178 0.3973 c.37.1.3 31936 2rhmA 193 0.7213 2a5yB 549 0.7652 1zuhA 168 1.140 2dvwB 83 1.267 2r2aA 199 1.474 1ly1A 181 1.984 c.37.1.1 74334 1rkbA 173 2.082 c.37.1.1 111854 1viaA 175 2.122 c.37.1.2 100754 2g1kA 176 2.409 c.37.1.2 134519 2ze7A 253 2.670 1ukzA 203 2.859 c.37.1.1 31840 1knqA 175 2.881 c.37.1.17 72786 1uj2A 252 3.482 c.37.1.6 99452 2cdnA 201 4.011 c.37.1.1 130289 2hf9A 226 4.479 2bdtA 189 4.482 c.37.1.25 128344 2c95A 196 4.553 1y63A 184 4.764 c.37.1.1 116494 1n0wA 243 5.023 c.37.1.11 79772 1kagA 173 5.635 c.37.1.2 72249 1qf9A 194 5.951 c.37.1.1 31848 1ukz 203 6.346 1svmA 377 7.177 c.37.1.20 112126 2z43A 324 7.373 2axpA 173 8.253 c.37.1.1 127497 2bwjA 199 8.517 2qgnA 322 9.802 2gzaA 361 9.905 2og2A 359 10.13 1ki9A 192 10.42 c.37.1.1 84404 3bh0A 315 10.56 2p67A 341 10.75 2ak3A 226 10.91 c.37.1.1,g.41.2.1 31892,45193 2i1qA 322 11.02 a.60.4.1,c.37.1.11 136984,136985 1oywA 523 11.09 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1zd8A 227 11.19 1ye8A 178 11.54 c.37.1.11 123010 2qm8A 337 11.55 1xp8A 366 11.56 c.37.1.11,d.48.1.1 115735,115736 1xx6A 191 11.59 c.37.1.24,g.39.1.14 116139,116140 1rifA 282 11.81 c.37.1.23 97507 1sq5A 308 13.12 c.37.1.6 105882 2qy9A 309 14.02 2v1xA 591 14.68 2pt5A 168 14.70 2fz4A 237 14.82 c.37.1.19 134419 2f6rA 281 14.84 2rebA 352 14.84 c.37.1.11,d.48.1.1 32282,38767 2iutA 574 14.85 3b9qA 302 15.16 2db3A 434 15.44 2cvhA 220 15.51 3crrA 323 15.68 2grjA 192 15.95 1rj9A 304 16.02 a.24.13.1,c.37.1.10 97553,97554 1e9rA 437 16.70 c.37.1.11 64827 1khtA 192 17.06 c.37.1.1 84401 1zinA 217 17.54 c.37.1.1,g.41.2.1 31915,45178 2pbrA 195 18.32 2qt1A 207 18.85 1kdoA 227 18.90 c.37.1.1 68478 1g6oA 330 19.10 c.37.1.11 32430 2va8A 715 19.24 2dznB 82 20.24 1m7gA 211 20.66 c.37.1.4 78724 1xrjA 261 20.90 c.37.1.6 122256 1tq4A 413 21.25 c.37.1.8 107201 2gjsA 176 21.42 c.37.1.8 135287 3c8uA 208 21.83 2rgxA 206 22.11 4tmkA 213 22.28 c.37.1.1 31930 2gk6A 624 22.32 1u9iA 519 22.54 c.37.1.11,c.37.1.11 119637,119638 1gl6A 436 22.64 c.37.1.11 70259 2pt7A 330 23.09 2i4iA 417 23.54 2gdjA 264 24.22 c.37.1.11 135018 3be4A 217 24.32 1e4yA 214 24.40 c.37.1.1,g.41.2.1 31901,45181 1wf3A 301 24.47 c.37.1.8,d.52.3.1 114574,114575 2p5sA 199 24.55 2pcjA 224 24.99 1rz3A 201 25.20 c.37.1.6 98132 1vplA 256 25.22 c.37.1.12 113966 1akyA 220 25.38 c.37.1.1,g.41.2.1 31896,45197 2z0mA 337 25.41 2ccjA 205 25.51 1ak2A 233 26.04 c.37.1.1,g.41.2.1 31894,45195 2eyuA 261 26.35 3b85A 208 26.57 2qu8A 228 27.10 1yqtA 538 27.13 2dr3A 247 27.67 2dpyA 438 29.05 2pmkA 243 29.34 2eu8A 216 29.41 2it1A 362 29.54 2fwrA 472 29.56 c.37.1.19,c.37.1.19 134253,134254 1p6xA 334 29.64 c.37.1.1 94195 2oap1 511 29.64 1zm7A 230 30.09 2oblA 347 30.14 2hjgA 436 31.06 2dpxA 174 31.18 1ex7A 186 31.34 c.37.1.1 59537 1znwA 207 31.45 c.37.1.1 125412 1gky 187 31.79 1zin 217 32.15 1oxxK 353 32.26 b.40.6.3,c.37.1.12 93715,93716 1zu4A 320 33.22 2zejA 184 34.34 1u94A 356 35.00 c.37.1.11,d.48.1.1 107743,107744 1j8mF 297 35.64 a.24.13.1,c.37.1.10 62742,62743 1g291 372 36.31 1x6vA 630 37.75 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2plrA 213 37.87 1puiA 210 38.30 c.37.1.8 88292 1z47A 355 38.73 1nn5A 215 39.02 c.37.1.1 85892 2pjzA 263 39.41 2nq2C 253 40.28 2ixeA 271 40.29 2px0A 296 40.33 2pzeA 229 40.39 2z0hA 197 41.41 2j69A 695 41.75 1vmaA 306 41.79 a.24.13.1,c.37.1.10 108887,108888 1ky3A 182 43.52 c.37.1.8 73193 1qzmA 94 43.97 c.37.1.20 96651 1of1A 376 43.98 c.37.1.1 103924 1mkyA 439 44.51 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2e87A 357 44.93 1l1eA 287 45.36 c.66.1.18 73454 2yvuA 186 45.56 1s96A 219 45.62 c.37.1.1 98740 2ffqA 171 46.65 3tmkA 216 46.85 c.37.1.1 31920 2c61A 469 47.56 3bwdD 182 48.90 1jjvA 206 49.14 c.37.1.1 71698 2bmeA 186 50.10 c.37.1.8 128790 1yzqA 170 50.21 c.37.1.8 124286 1ek0A 170 50.50 c.37.1.8 32076 1np6A 174 50.75 c.37.1.10 85954 2q3hA 201 51.29 1t6nA 220 51.47 c.37.1.19 106576 1r2qA 170 51.78 c.37.1.8 96874 2dykA 161 52.08 1g6hA 257 52.09 c.37.1.12 60318 2gcoA 201 52.21 2o57A 297 52.94 1h65A 270 54.52 c.37.1.8 65640 1p5zB 263 55.16 c.37.1.1 87815 1kaoA 167 55.28 c.37.1.8 32014 2qorA 204 56.79 2ff7A 247 57.05 c.37.1.12 133377 2z83A 459 57.33 1kmqA 184 57.85 c.37.1.8 84412 1ji0A 240 58.47 c.37.1.12 71665 2ax4A 198 59.20 1ckeA 227 59.30 c.37.1.1 31846 1ctqA 166 59.56 c.37.1.8 31965 1e2kA 331 59.83 c.37.1.1 31854 2bbsA 290 60.50 2gf9A 189 60.62 1z2aA 168 60.65 c.37.1.8 124374 1f6bA 198 60.79 c.37.1.8 64986 1sgwA 214 61.30 c.37.1.12 105541 1sviA 195 61.95 c.37.1.8 106048 1yksA 440 63.82 c.37.1.14,c.37.1.14 123561,123562 1l2tA 235 64.49 c.37.1.12 73514 1b0uA 262 65.28 c.37.1.12 32370 2g6bA 180 65.52 c.37.1.8 134701 1cr1A 296 65.73 c.37.1.11 32286 1xjcA 169 65.96 c.37.1.10 115387 1gtvA 214 66.04 c.37.1.1 70537 2pezA 179 66.09 2vp4A 230 66.28 1kjwA 295 67.51 b.34.2.1,c.37.1.1 68643,68644 1ls1A 295 67.68 a.24.13.1,c.37.1.10 78170,78171 1z0jA 170 67.75 c.37.1.8 124319 2b8tA 223 67.79 c.37.1.24,g.39.1.14 128109,128110 1yrbA 262 68.25 c.37.1.10 123915 1tq6A 413 68.80 c.37.1.8 107202 2rexB 197 69.24 1mr3F 181 70.05 c.37.1.8 79422 2d2eA 250 70.09 1pujA 282 70.92 c.37.1.8 88294 2gj8A 172 71.15 c.37.1.8 135270 2ce2X 166 72.56 1u8zA 168 73.67 c.37.1.8 113212 2fn4A 181 73.96 c.37.1.8 133806 1x1rA 178 74.47 c.37.1.8 121595 1w4rA 195 74.77 1i2mA 216 75.31 c.37.1.8 61568 2pl3A 236 76.28 2akaB 299 76.81 c.37.1.8 126914 1udxA 416 79.24 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1nlfA 279 80.18 c.37.1.11 85850 1vg8A 207 81.26 c.37.1.8 108606 2hxsA 178 81.49 2ihyA 279 81.78 1wrbA 253 82.14 c.37.1.19 121192 1kshA 186 83.94 c.37.1.8 72914 2an9A 207 84.03 c.37.1.1 127037 2oxcA 230 84.23 1xtqA 177 85.01 c.37.1.8 122297 2cbzA 237 86.63 2qi9C 249 88.22 1a7j 290 88.39 1m7bA 184 88.40 c.37.1.8 74572 2bcgY 206 88.90 c.37.1.8 128285 3bs4A 260 89.21 1nf3A 195 89.89 c.37.1.8 85594