# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 3.92e-08 1lv7A 257 6.69e-07 c.37.1.20 78232 1in4A 334 2.62e-06 a.4.5.11,c.37.1.20 62597,62598 1in6A 334 3.33e-06 a.4.5.11,c.37.1.20 62601,62602 1d2nA 272 6.54e-06 c.37.1.20 32428 1sxjC 340 7.00e-06 a.80.1.1,c.37.1.20 106085,106086 2chgA 226 7.87e-06 1njgA 250 9.84e-06 c.37.1.20 85785 3bosA 242 1.13e-05 1sxjA 511 1.31e-05 a.80.1.1,c.37.1.20 106081,106082 1g41A 444 1.73e-05 c.37.1.20 32450 2r44A 331 2.01e-05 1sxjE 354 2.37e-05 a.80.1.1,c.37.1.20 106089,106090 1w5tA 412 4.35e-05 a.4.5.11,c.37.1.20 114255,114256 2bjvA 265 4.67e-05 1fnnA 389 4.86e-05 a.4.5.11,c.37.1.20 16129,32426 1g8pA 350 9.80e-05 c.37.1.20 60376 1a5t 334 0.000184 1lw7A 365 0.000215 c.26.1.3,c.37.1.1 74295,74296 2z4sA 440 0.000229 2c9oA 456 0.000276 1u0jA 267 0.000426 c.37.1.20 107546 2gxaA 274 0.000438 2fnaA 357 0.000691 a.4.5.11,c.37.1.20 133809,133810 1jbkA 195 0.000759 c.37.1.20 71631 1gvnB 287 0.001303 c.37.1.21 76354 1a5tA 334 0.003260 a.80.1.1,c.37.1.20 18450,32423 2p65A 187 0.004089 1tueA 212 0.004693 c.37.1.20 107323 2gnoA 305 0.01190 a.80.1.1,c.37.1.20 135414,135415 2qgzA 308 0.01238 2p5tB 253 0.02576 1e6cA 173 0.03412 c.37.1.2 59296 2iyvA 184 0.06107 c.37.1.2 137812 3co5A 143 0.1186 1ltqA 301 0.1317 c.108.1.9,c.37.1.1 78208,78209 1qhxA 178 0.2607 c.37.1.3 31936 1zuhA 168 0.4831 2a5yB 549 0.4987 2g1kA 176 0.6927 c.37.1.2 134519 2rhmA 193 0.7007 2dvwB 83 0.7490 1rkbA 173 0.8038 c.37.1.1 111854 2r2aA 199 0.8590 1viaA 175 0.9113 c.37.1.2 100754 1ly1A 181 0.9292 c.37.1.1 74334 2ze7A 253 1.268 2bdtA 189 1.663 c.37.1.25 128344 1uj2A 252 2.014 c.37.1.6 99452 1ukzA 203 2.208 c.37.1.1 31840 1kagA 173 2.834 c.37.1.2 72249 1knqA 175 2.972 c.37.1.17 72786 2hf9A 226 2.974 1n0wA 243 3.195 c.37.1.11 79772 2c95A 196 3.458 1y63A 184 3.582 c.37.1.1 116494 2cdnA 201 4.473 c.37.1.1 130289 2qgnA 322 4.590 2z43A 324 4.778 1ukz 203 5.099 1qf9A 194 5.173 c.37.1.1 31848 1xx6A 191 5.671 c.37.1.24,g.39.1.14 116139,116140 2bwjA 199 5.819 2pt5A 168 5.890 2iutA 574 6.050 2gzaA 361 6.227 1svmA 377 6.280 c.37.1.20 112126 2axpA 173 6.291 c.37.1.1 127497 2ak3A 226 6.848 c.37.1.1,g.41.2.1 31892,45193 1ki9A 192 7.692 c.37.1.1 84404 2qm8A 337 7.855 1rifA 282 8.088 c.37.1.23 97507 3bh0A 315 8.270 2fwrA 472 8.461 c.37.1.19,c.37.1.19 134253,134254 1zd8A 227 8.469 1khtA 192 9.165 c.37.1.1 84401 2qy9A 309 9.321 2fz4A 237 9.389 c.37.1.19 134419 2og2A 359 9.663 3crrA 323 10.39 1ye8A 178 10.52 c.37.1.11 123010 1sq5A 308 10.69 c.37.1.6 105882 2p67A 341 10.81 1zinA 217 11.08 c.37.1.1,g.41.2.1 31915,45178 2grjA 192 11.52 2cvhA 220 11.52 1g6oA 330 12.11 c.37.1.11 32430 2i1qA 322 12.71 a.60.4.1,c.37.1.11 136984,136985 2rebA 352 12.83 c.37.1.11,d.48.1.1 32282,38767 1xrjA 261 13.09 c.37.1.6 122256 1rz3A 201 13.30 c.37.1.6 98132 1u9iA 519 13.47 c.37.1.11,c.37.1.11 119637,119638 1oywA 523 13.53 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1rj9A 304 13.55 a.24.13.1,c.37.1.10 97553,97554 1xp8A 366 13.65 c.37.1.11,d.48.1.1 115735,115736 2f6rA 281 13.73 2dznB 82 13.84 2v1xA 591 14.08 3c8uA 208 14.14 1p6xA 334 14.53 c.37.1.1 94195 3b9qA 302 14.59 1kdoA 227 14.64 c.37.1.1 68478 2qt1A 207 14.89 2dpyA 438 15.17 2pbrA 195 15.39 3b85A 208 15.39 2va8A 715 15.95 1m7gA 211 15.99 c.37.1.4 78724 1e4yA 214 16.04 c.37.1.1,g.41.2.1 31901,45181 2zejA 184 16.11 2eu8A 216 16.85 2ccjA 205 16.96 3be4A 217 16.97 2px0A 296 17.51 4tmkA 213 17.67 c.37.1.1 31930 2gdjA 264 17.73 c.37.1.11 135018 1tq4A 413 18.09 c.37.1.8 107201 1ak2A 233 18.18 c.37.1.1,g.41.2.1 31894,45195 1akyA 220 18.53 c.37.1.1,g.41.2.1 31896,45197 2gjsA 176 19.50 c.37.1.8 135287 2pt7A 330 19.71 2db3A 434 19.81 2eyuA 261 19.98 2gk6A 624 20.31 1zm7A 230 20.43 2p5sA 199 20.96 1gl6A 436 21.64 c.37.1.11 70259 1zin 217 21.76 1qzmA 94 21.95 c.37.1.20 96651 1of1A 376 22.11 c.37.1.1 103924 2pcjA 224 22.16 2dr3A 247 22.50 1znwA 207 22.71 c.37.1.1 125412 2i4iA 417 22.92 1e9rA 437 22.97 c.37.1.11 64827 1nn5A 215 23.08 c.37.1.1 85892 2rgxA 206 23.44 2oblA 347 23.90 3tmkA 216 23.99 c.37.1.1 31920 2z0mA 337 24.13 2it1A 362 24.64 1p5zB 263 24.86 c.37.1.1 87815 2oap1 511 25.14 2pmkA 243 25.86 2j69A 695 26.36 1j8mF 297 26.92 a.24.13.1,c.37.1.10 62742,62743 1yzqA 170 27.29 c.37.1.8 124286 2hjgA 436 28.27 1z47A 355 28.41 2yvuA 186 28.50 1puiA 210 28.96 c.37.1.8 88292 1l1eA 287 29.10 c.66.1.18 73454 2ffqA 171 29.23 1gtvA 214 29.75 c.37.1.1 70537 2q3hA 201 30.23 1ek0A 170 30.33 c.37.1.8 32076 2z0hA 197 30.51 1yqtA 538 30.75 1zu4A 320 30.81 2z83A 459 31.01 1g291 372 31.16 2gcoA 201 31.26 1np6A 174 31.53 c.37.1.10 85954 1jjvA 206 31.54 c.37.1.1 71698 1gky 187 31.74 3bwdD 182 31.90 2qu8A 228 32.38 2dpxA 174 32.41 2pzeA 229 34.04 1e2kA 331 34.45 c.37.1.1 31854 2pjzA 263 35.07 2plrA 213 35.76 1oxxK 353 35.81 b.40.6.3,c.37.1.12 93715,93716 1wf3A 301 35.88 c.37.1.8,d.52.3.1 114574,114575 1ky3A 182 36.97 c.37.1.8 73193 2bmeA 186 36.98 c.37.1.8 128790 2orwA 184 37.32 1vmaA 306 37.34 a.24.13.1,c.37.1.10 108887,108888 1vplA 256 37.40 c.37.1.12 113966 1x6vA 630 38.35 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2c61A 469 38.67 1u94A 356 39.21 c.37.1.11,d.48.1.1 107743,107744 2vp4A 230 40.13 1i2mA 216 40.49 c.37.1.8 61568 1kaoA 167 40.67 c.37.1.8 32014 1kjwA 295 40.80 b.34.2.1,c.37.1.1 68643,68644 1ctqA 166 41.18 c.37.1.8 31965 1ex7A 186 42.84 c.37.1.1 59537 1kmqA 184 43.43 c.37.1.8 84412 2ixeA 271 43.75 1f6bA 198 43.77 c.37.1.8 64986 1s96A 219 44.10 c.37.1.1 98740 1m7bA 184 44.16 c.37.1.8 74572 2fk8A 318 44.25 c.66.1.18 133648 2ff7A 247 44.53 c.37.1.12 133377 2gf9A 189 45.35 2pezA 179 45.41 1r2qA 170 46.10 c.37.1.8 96874 1z0jA 170 46.74 c.37.1.8 124319 2g6bA 180 47.78 c.37.1.8 134701 1mkyA 439 47.79 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1ji0A 240 48.78 c.37.1.12 71665 2ax4A 198 48.78 1u8zA 168 50.65 c.37.1.8 113212 1z2aA 168 50.68 c.37.1.8 124374 1xjcA 169 50.70 c.37.1.10 115387 1x1rA 178 51.61 c.37.1.8 121595 2o57A 297 51.77 1mr3F 181 52.68 c.37.1.8 79422 2bbsA 290 52.97 1t0hB 224 53.06 c.37.1.1 106208 1a7j 290 53.37 2hxsA 178 53.48 1w4rA 195 54.12 1cr1A 296 55.36 c.37.1.11 32286 2ce2X 166 55.94 2nq2C 253 56.07 2ew1A 201 56.16 c.37.1.8 132446 1yksA 440 56.33 c.37.1.14,c.37.1.14 123561,123562 1odfA 290 56.55 c.37.1.6 92782 1vg8A 207 56.57 c.37.1.8 108606 1mh1A 186 57.28 c.37.1.8 32002 1yrbA 262 57.35 c.37.1.10 123915 1tq6A 413 57.40 c.37.1.8 107202 1kpgA 287 57.99 c.66.1.18 68735 2an9A 207 58.00 c.37.1.1 127037 1vhtA 218 58.50 c.37.1.1 100700 2rexB 197 59.27 2b8tA 223 60.25 c.37.1.24,g.39.1.14 128109,128110 1pujA 282 60.32 c.37.1.8 88294 1ls1A 295 60.46 a.24.13.1,c.37.1.10 78170,78171 2e87A 357 61.94 2is6A 680 62.27 1sviA 195 62.33 c.37.1.8 106048 1t6nA 220 63.11 c.37.1.19 106576 1ckeA 227 63.67 c.37.1.1 31846 1htwA 158 64.12 c.37.1.18 71083 2bcgY 206 65.23 c.37.1.8 128285 1b0uA 262 65.73 c.37.1.12 32370 2qorA 204 66.56 2fn4A 181 67.07 c.37.1.8 133806 1g6hA 257 67.13 c.37.1.12 60318 1nf3A 195 68.58 c.37.1.8 85594 1mh1 186 69.41 2gj8A 172 70.47 c.37.1.8 135270 2dykA 161 70.51 1wrbA 253 71.56 c.37.1.19 121192 1l2tA 235 71.92 c.37.1.12 73514 1a7jA 290 72.17 c.37.1.6 31952 2qi9C 249 74.18 1qg4A 216 74.99 c.37.1.8 32035 1h65A 270 75.06 c.37.1.8 65640 2f9lA 199 76.38 c.37.1.8 133166 2bmfA 451 76.74 c.37.1.14,c.37.1.14 128791,128792 2eryA 172 77.13 c.37.1.8 132306 2ahrA 259 78.87 a.100.1.10,c.2.1.6 126775,126776 1nlfA 279 79.34 c.37.1.11 85850 1fzqA 181 80.15 c.37.1.8 32060 1wmsA 177 80.40 c.37.1.8 109414 1x3sA 195 80.62 c.37.1.8 121670 2d2eA 250 80.69 1sgwA 214 80.74 c.37.1.12 105541 1knxA 312 81.28 c.98.2.1,c.91.1.2 77459,77460 1ko7A 314 81.54 c.98.2.1,c.91.1.2 72797,72798 3bfkA 181 81.87 2f1rA 171 82.10 1c4oA 664 83.77 c.37.1.19,c.37.1.19 32415,32416 2akaB 299 85.10 c.37.1.8 126914 2qm0A 275 85.51 1kgdA 180 86.24 c.37.1.1 68582 2h17A 181 87.54 3c5cA 187 87.82 1z06A 189 89.22 c.37.1.8 124301 1xtqA 177 89.39 c.37.1.8 122297