# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 3.15e-08 1lv7A 257 7.50e-07 c.37.1.20 78232 1in4A 334 2.07e-06 a.4.5.11,c.37.1.20 62597,62598 1in6A 334 2.56e-06 a.4.5.11,c.37.1.20 62601,62602 1sxjC 340 6.18e-06 a.80.1.1,c.37.1.20 106085,106086 2chgA 226 6.31e-06 1d2nA 272 7.01e-06 c.37.1.20 32428 1njgA 250 8.23e-06 c.37.1.20 85785 3bosA 242 1.05e-05 1sxjA 511 1.12e-05 a.80.1.1,c.37.1.20 106081,106082 2r44A 331 1.47e-05 1g41A 444 1.74e-05 c.37.1.20 32450 1sxjE 354 2.36e-05 a.80.1.1,c.37.1.20 106089,106090 2bjvA 265 4.43e-05 1w5tA 412 4.74e-05 a.4.5.11,c.37.1.20 114255,114256 1fnnA 389 5.23e-05 a.4.5.11,c.37.1.20 16129,32426 1g8pA 350 0.000104 c.37.1.20 60376 1a5t 334 0.000174 1lw7A 365 0.000188 c.26.1.3,c.37.1.1 74295,74296 2c9oA 456 0.000207 2z4sA 440 0.000211 1u0jA 267 0.000424 c.37.1.20 107546 2gxaA 274 0.000428 2fnaA 357 0.000701 a.4.5.11,c.37.1.20 133809,133810 1jbkA 195 0.000891 c.37.1.20 71631 1gvnB 287 0.001235 c.37.1.21 76354 1a5tA 334 0.003647 a.80.1.1,c.37.1.20 18450,32423 2p65A 187 0.004424 1tueA 212 0.005054 c.37.1.20 107323 2gnoA 305 0.01136 a.80.1.1,c.37.1.20 135414,135415 2qgzA 308 0.01158 2p5tB 253 0.02462 1e6cA 173 0.03889 c.37.1.2 59296 2iyvA 184 0.06691 c.37.1.2 137812 3co5A 143 0.1177 1ltqA 301 0.1665 c.108.1.9,c.37.1.1 78208,78209 1qhxA 178 0.2496 c.37.1.3 31936 2a5yB 549 0.4439 1zuhA 168 0.5555 2rhmA 193 0.6576 2r2aA 199 0.8039 2dvwB 83 0.8193 2g1kA 176 0.9083 c.37.1.2 134519 1rkbA 173 1.001 c.37.1.1 111854 1viaA 175 1.061 c.37.1.2 100754 1ly1A 181 1.080 c.37.1.1 74334 2ze7A 253 1.345 2bdtA 189 1.976 c.37.1.25 128344 1ukzA 203 2.184 c.37.1.1 31840 1uj2A 252 2.422 c.37.1.6 99452 1knqA 175 2.998 c.37.1.17 72786 1kagA 173 3.076 c.37.1.2 72249 1y63A 184 3.654 c.37.1.1 116494 2hf9A 226 3.821 2c95A 196 4.101 1n0wA 243 4.136 c.37.1.11 79772 2cdnA 201 4.534 c.37.1.1 130289 2qgnA 322 4.969 2z43A 324 5.612 2axpA 173 5.724 c.37.1.1 127497 2gzaA 361 5.958 2ak3A 226 6.002 c.37.1.1,g.41.2.1 31892,45193 1ukz 203 6.121 1svmA 377 6.150 c.37.1.20 112126 1qf9A 194 7.015 c.37.1.1 31848 2pt5A 168 7.077 1xx6A 191 7.098 c.37.1.24,g.39.1.14 116139,116140 1zd8A 227 7.195 2bwjA 199 7.449 2iutA 574 7.793 2qm8A 337 7.992 1rifA 282 8.146 c.37.1.23 97507 2og2A 359 9.201 2fz4A 237 9.510 c.37.1.19 134419 1ki9A 192 9.562 c.37.1.1 84404 1oywA 523 10.40 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2qy9A 309 10.74 1khtA 192 10.94 c.37.1.1 84401 3bh0A 315 11.04 2p67A 341 11.45 1ye8A 178 11.66 c.37.1.11 123010 1g6oA 330 11.80 c.37.1.11 32430 2rebA 352 11.95 c.37.1.11,d.48.1.1 32282,38767 2dpyA 438 12.06 2fwrA 472 12.13 c.37.1.19,c.37.1.19 134253,134254 3crrA 323 12.35 1xp8A 366 12.46 c.37.1.11,d.48.1.1 115735,115736 2v1xA 591 12.51 2cvhA 220 12.60 1sq5A 308 12.74 c.37.1.6 105882 2dznB 82 12.85 1zinA 217 12.86 c.37.1.1,g.41.2.1 31915,45178 3c8uA 208 12.91 1u9iA 519 13.09 c.37.1.11,c.37.1.11 119637,119638 1rj9A 304 14.13 a.24.13.1,c.37.1.10 97553,97554 1m7gA 211 14.26 c.37.1.4 78724 3b9qA 302 14.73 2grjA 192 14.91 1rz3A 201 15.01 c.37.1.6 98132 2qt1A 207 15.40 2va8A 715 15.58 2pbrA 195 15.79 2f6rA 281 15.96 2pt7A 330 15.99 3be4A 217 16.01 1gl6A 436 16.21 c.37.1.11 70259 1kdoA 227 16.31 c.37.1.1 68478 1xrjA 261 16.91 c.37.1.6 122256 1e9rA 437 16.98 c.37.1.11 64827 1e4yA 214 17.17 c.37.1.1,g.41.2.1 31901,45181 2i1qA 322 17.54 a.60.4.1,c.37.1.11 136984,136985 2oblA 347 17.62 3b85A 208 17.74 1akyA 220 18.44 c.37.1.1,g.41.2.1 31896,45197 2gjsA 176 18.61 c.37.1.8 135287 2eu8A 216 19.04 2db3A 434 19.21 1tq4A 413 19.43 c.37.1.8 107201 1zm7A 230 19.57 1p6xA 334 19.66 c.37.1.1 94195 2zejA 184 20.66 2ccjA 205 21.07 4tmkA 213 21.50 c.37.1.1 31930 1ak2A 233 21.88 c.37.1.1,g.41.2.1 31894,45195 2oap1 511 22.10 2pcjA 224 22.18 2rgxA 206 22.26 2px0A 296 22.65 1nn5A 215 22.81 c.37.1.1 85892 2gdjA 264 23.18 c.37.1.11 135018 1zin 217 23.71 2p5sA 199 23.80 1qzmA 94 24.39 c.37.1.20 96651 2gk6A 624 25.05 2eyuA 261 25.16 2dr3A 247 25.29 2pmkA 243 25.80 2z0mA 337 25.82 1p5zB 263 25.97 c.37.1.1 87815 1of1A 376 26.07 c.37.1.1 103924 2j69A 695 26.27 2qu8A 228 26.59 1znwA 207 26.81 c.37.1.1 125412 1zu4A 320 27.41 2i4iA 417 27.53 1vplA 256 27.87 c.37.1.12 113966 1j8mF 297 28.08 a.24.13.1,c.37.1.10 62742,62743 2hjgA 436 28.31 2yvuA 186 28.35 2dpxA 174 28.48 3tmkA 216 29.14 c.37.1.1 31920 1yzqA 170 29.43 c.37.1.8 124286 1l1eA 287 29.67 c.66.1.18 73454 3bwdD 182 30.67 2ffqA 171 31.15 2it1A 362 32.07 2z0hA 197 32.30 2gcoA 201 32.86 1yqtA 538 32.87 2pzeA 229 32.90 2c61A 469 33.62 1g291 372 34.48 1jjvA 206 35.92 c.37.1.1 71698 1z47A 355 36.29 1puiA 210 36.41 c.37.1.8 88292 2o57A 297 36.76 2q3hA 201 37.09 1ky3A 182 37.55 c.37.1.8 73193 2z83A 459 37.76 2plrA 213 38.63 1oxxK 353 39.16 b.40.6.3,c.37.1.12 93715,93716 1np6A 174 39.56 c.37.1.10 85954 1ek0A 170 39.77 c.37.1.8 32076 2bmeA 186 40.00 c.37.1.8 128790 2pjzA 263 40.05 1e2kA 331 41.03 c.37.1.1 31854 1x6vA 630 41.17 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1kpgA 287 41.46 c.66.1.18 68735 1i2mA 216 41.67 c.37.1.8 61568 2e87A 357 41.93 1u94A 356 42.44 c.37.1.11,d.48.1.1 107743,107744 1wf3A 301 42.50 c.37.1.8,d.52.3.1 114574,114575 2fk8A 318 42.52 c.66.1.18 133648 1yrbA 262 43.09 c.37.1.10 123915 1g6hA 257 43.23 c.37.1.12 60318 2gf9A 189 43.67 1kaoA 167 44.21 c.37.1.8 32014 1gky 187 44.36 1ji0A 240 45.47 c.37.1.12 71665 2vp4A 230 45.85 2pezA 179 46.38 2orwA 184 46.58 2ixeA 271 46.69 2bbsA 290 47.58 2ax4A 198 47.68 1vmaA 306 48.15 a.24.13.1,c.37.1.10 108887,108888 1ctqA 166 48.30 c.37.1.8 31965 1kmqA 184 48.39 c.37.1.8 84412 1ex7A 186 48.69 c.37.1.1 59537 1gtvA 214 48.91 c.37.1.1 70537 2dykA 161 48.96 1z2aA 168 49.62 c.37.1.8 124374 2g6bA 180 49.64 c.37.1.8 134701 1ckeA 227 49.65 c.37.1.1 31846 2ff7A 247 51.03 c.37.1.12 133377 1r2qA 170 51.17 c.37.1.8 96874 1h65A 270 54.61 c.37.1.8 65640 1f6bA 198 55.07 c.37.1.8 64986 1a7j 290 55.13 1s96A 219 55.45 c.37.1.1 98740 1t0hB 224 55.82 c.37.1.1 106208 1u8zA 168 56.01 c.37.1.8 113212 1kjwA 295 56.59 b.34.2.1,c.37.1.1 68643,68644 1m7bA 184 56.66 c.37.1.8 74572 2nq2C 253 56.67 2an9A 207 57.01 c.37.1.1 127037 1w4rA 195 57.45 1mkyA 439 57.72 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2rexB 197 57.89 1z0jA 170 58.51 c.37.1.8 124319 1xjcA 169 59.61 c.37.1.10 115387 2hxsA 178 59.64 1sviA 195 60.05 c.37.1.8 106048 1t6nA 220 60.53 c.37.1.19 106576 2b8tA 223 60.58 c.37.1.24,g.39.1.14 128109,128110 1tq6A 413 61.35 c.37.1.8 107202 1yksA 440 61.60 c.37.1.14,c.37.1.14 123561,123562 1sgwA 214 62.65 c.37.1.12 105541 2f1rA 171 63.65 1x1rA 178 64.23 c.37.1.8 121595 1cr1A 296 65.00 c.37.1.11 32286 1ko7A 314 65.45 c.98.2.1,c.91.1.2 72797,72798 2gj8A 172 65.90 c.37.1.8 135270 1a7jA 290 67.28 c.37.1.6 31952 1ls1A 295 67.76 a.24.13.1,c.37.1.10 78170,78171 1nf3A 195 68.87 c.37.1.8 85594 1vg8A 207 69.73 c.37.1.8 108606 2ew1A 201 70.29 c.37.1.8 132446 2ce2X 166 70.76 1mh1A 186 70.84 c.37.1.8 32002 1nlfA 279 71.22 c.37.1.11 85850 2qi9C 249 72.16 1l2tA 235 73.00 c.37.1.12 73514 1b0uA 262 73.33 c.37.1.12 32370 2jdiD 482 75.97 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1vhtA 218 76.77 c.37.1.1 100700 2fn4A 181 77.25 c.37.1.8 133806 1qg4A 216 77.41 c.37.1.8 32035 1h8eA 510 77.96 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1mh1 186 78.51 1w44A 331 79.54 c.37.1.11 114147 2bcgY 206 79.82 c.37.1.8 128285 1knxA 312 81.64 c.98.2.1,c.91.1.2 77459,77460 2jdiA 510 84.04 3bfkA 181 84.13 1x3sA 195 85.26 c.37.1.8 121670 2eryA 172 85.99 c.37.1.8 132306 2hpsA 186 87.10 2oxcA 230 88.12 1mr3F 181 88.46 c.37.1.8 79422