# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 2.80e-27 1xwiA 322 6.40e-26 1lv7A 257 1.87e-22 c.37.1.20 78232 2c9oA 456 4.36e-20 1nsf 273 1.10e-18 2z4sA 440 6.57e-18 1d2nA 272 1.02e-17 c.37.1.20 32428 1in6A 334 2.19e-17 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 2.63e-17 a.4.5.11,c.37.1.20 62597,62598 1gvnB 287 1.18e-16 c.37.1.21 76354 1u0jA 267 1.08e-15 c.37.1.20 107546 1w5tA 412 2.11e-15 a.4.5.11,c.37.1.20 114255,114256 2p5tB 253 3.70e-14 1lw7A 365 2.25e-13 c.26.1.3,c.37.1.1 74295,74296 1fnnA 389 5.19e-13 a.4.5.11,c.37.1.20 16129,32426 1a5t 334 6.53e-12 2gxaA 274 1.17e-11 1sxjE 354 3.18e-11 a.80.1.1,c.37.1.20 106089,106090 1svmA 377 1.98e-10 c.37.1.20 112126 1jbkA 195 6.68e-10 c.37.1.20 71631 1tueA 212 2.16e-09 c.37.1.20 107323 1rkbA 173 2.50e-09 c.37.1.1 111854 1sxjA 511 9.28e-09 a.80.1.1,c.37.1.20 106081,106082 3bosA 242 1.26e-08 1u94A 356 2.87e-07 c.37.1.11,d.48.1.1 107743,107744 2p65A 187 5.65e-07 2dvwB 83 8.01e-07 1viaA 175 1.64e-06 c.37.1.2 100754 1sxjC 340 2.11e-06 a.80.1.1,c.37.1.20 106085,106086 2qgzA 308 2.15e-06 2ak3A 226 2.37e-06 c.37.1.1,g.41.2.1 31892,45193 1ny6A 267 7.23e-06 c.37.1.20 92321 1e6cA 173 1.29e-05 c.37.1.2 59296 2bjvA 265 2.70e-05 2chgA 226 4.17e-05 1njgA 250 6.28e-05 c.37.1.20 85785 1g8pA 350 8.26e-05 c.37.1.20 60376 1p3jA 217 0.000150 c.37.1.1,g.41.2.1 94022,94023 2r44A 331 0.000205 1zd8A 227 0.000437 2reb 352 0.000704 2dznB 82 0.000756 1a5tA 334 0.001035 a.80.1.1,c.37.1.20 18450,32423 1qhxA 178 0.001897 c.37.1.3 31936 1ukz 203 0.002051 2gnoA 305 0.002742 a.80.1.1,c.37.1.20 135414,135415 1zin 217 0.003347 1ltqA 301 0.005966 c.108.1.9,c.37.1.1 78208,78209 1n25A 368 0.01406 c.37.1.20 85264 3co5A 143 0.01582 1ly1A 181 0.01621 c.37.1.1 74334 1qf9A 194 0.01754 c.37.1.1 31848 1e4yA 214 0.01859 c.37.1.1,g.41.2.1 31901,45181 2r2aA 199 0.02473 1oe0A 230 0.02520 c.37.1.1 92788 1knqA 175 0.02969 c.37.1.17 72786 2axpA 173 0.03883 c.37.1.1 127497 1g41A 444 0.04395 c.37.1.20 32450 1uj2A 252 0.06786 c.37.1.6 99452 1xp8A 366 0.07355 c.37.1.11,d.48.1.1 115735,115736 1zuhA 168 0.07774 2fnaA 357 0.07937 a.4.5.11,c.37.1.20 133809,133810 2g1kA 176 0.08472 c.37.1.2 134519 2ze7A 253 0.09935 2cdnA 201 0.1444 c.37.1.1 130289 2eu8A 216 0.1636 2cvhA 220 0.1818 1n3bA 216 0.1883 c.37.1.1 79959 2iyvA 184 0.2078 c.37.1.2 137812 3tmkA 216 0.2083 c.37.1.1 31920 2c95A 196 0.2358 2grjA 192 0.3406 1akyA 220 0.4243 c.37.1.1,g.41.2.1 31896,45197 2bdtA 189 0.5002 c.37.1.25 128344 2rhmA 193 0.5337 1z6gA 218 0.5417 1kdoA 227 0.5772 c.37.1.1 68478 1m7gA 211 0.6168 c.37.1.4 78724 1z8fA 228 0.6170 1kagA 173 0.7005 c.37.1.2 72249 1p5zB 263 0.7261 c.37.1.1 87815 2ga8A 359 0.7479 1ak2A 233 0.7698 c.37.1.1,g.41.2.1 31894,45195 2pt5A 168 0.9345 3be4A 217 1.239 1y63A 184 1.333 c.37.1.1 116494 1zinA 217 1.409 c.37.1.1,g.41.2.1 31915,45178 2bwjA 199 1.468 2ax4A 198 1.657 1ex7A 186 2.047 c.37.1.1 59537 2rgxA 206 2.184 1ukzA 203 2.209 c.37.1.1 31840 4tmkA 213 2.465 c.37.1.1 31930 1u9iA 519 2.517 c.37.1.11,c.37.1.11 119637,119638 2eyuA 261 2.562 1ki9A 192 2.675 c.37.1.1 84404 2yvuA 186 2.879 1s4qA 228 2.909 c.37.1.1 98507 1nlfA 279 2.995 c.37.1.11 85850 2nq2C 253 3.145 3bh0A 315 3.366 1n0wA 243 3.544 c.37.1.11 79772 2ccjA 205 3.611 1g6oA 330 3.706 c.37.1.11 32430 3c8uA 208 4.164 1jjvA 206 4.428 c.37.1.1 71698 3bs4A 260 4.783 2pjzA 263 5.282 2plrA 213 5.846 1znwA 207 6.362 c.37.1.1 125412 1kgdA 180 6.662 c.37.1.1 68582 1g8yA 279 6.812 c.37.1.11 32302 2qgnA 322 6.838 2it1A 362 6.898 1ckeA 227 7.751 c.37.1.1 31846 1xrjA 261 8.086 c.37.1.6 122256 2pbrA 195 8.479 2qorA 204 8.743 1nijA 318 9.549 c.37.1.10,d.237.1.1 85741,85742 2z0hA 197 9.749 2d2eA 250 9.886 2f6rA 281 9.910 1l2tA 235 9.98 c.37.1.12 73514 1x6vA 630 10.09 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1bif 469 10.11 2dr3A 247 11.60 1nksA 194 12.78 c.37.1.1 31886 2oap1 511 12.87 1esmA 316 13.04 c.37.1.6 31953 1d6jA 211 13.73 c.37.1.4 31940 1nrjB 218 14.48 c.37.1.8 86125 2gdjA 264 14.76 c.37.1.11 135018 3bfnA 379 15.16 2hehA 387 15.20 2qi9C 249 15.71 1p6xA 334 16.36 c.37.1.1 94195 1ye8A 178 16.79 c.37.1.11 123010 1vhtA 218 16.81 c.37.1.1 100700 1dekA 241 17.88 c.37.1.1 31842 1sq5A 308 18.28 c.37.1.6 105882 2e87A 357 18.89 2hjgA 436 19.25 2ihyA 279 19.41 1vplA 256 20.37 c.37.1.12 113966 1e2kA 331 21.45 c.37.1.1 31854 2vp4A 230 21.78 1ji0A 240 24.21 c.37.1.12 71665 1w44A 331 24.40 c.37.1.11 114147 1wdcC 156 24.55 a.39.1.5 17317 1rwyA 109 25.87 a.39.1.4 98002 1w36D 608 26.48 c.37.1.19,c.37.1.19 114128,114129 3b85A 208 26.53 1v5wA 343 26.72 c.37.1.11 108387 2p67A 341 26.74 1jakA 512 26.95 c.1.8.6,d.92.2.1 66472,66473 3b9qA 302 27.15 1xx6A 191 27.45 c.37.1.24,g.39.1.14 116139,116140 1zu4A 320 29.43 2pezA 179 29.91 1vmaA 306 30.60 a.24.13.1,c.37.1.10 108887,108888 1gky 187 31.08 2pzeA 229 31.39 2hf9A 226 31.77 1us6A 102 32.59 a.2.13.1 107999 1ls1A 295 33.55 a.24.13.1,c.37.1.10 78170,78171 1g6hA 257 34.18 c.37.1.12 60318 1bifA 469 34.34 c.37.1.7,c.60.1.4 31961,34003 2ijrA 300 35.21 1oxsC 353 36.03 b.40.6.3,c.37.1.12 87519,87520 1gdeA 389 36.50 c.67.1.1 60456 1jx2B 315 37.54 c.37.1.8 67404 3crrA 323 38.90 1knxA 312 39.27 c.98.2.1,c.91.1.2 77459,77460 1e9rA 437 41.23 c.37.1.11 64827 2cbzA 237 41.48 1g291 372 41.60 2ct9A 208 42.11 1ho1A 242 44.52 c.1.24.1 61097 1r0wA 286 44.72 c.37.1.12 96754 2rebA 352 45.23 c.37.1.11,d.48.1.1 32282,38767 2ew1A 201 45.37 c.37.1.8 132446 1ry6A 360 46.39 c.37.1.9 98090 2a5yB 549 47.15 1rfyA 102 47.20 a.2.13.1 111798 2pmkA 243 47.75 1khtA 192 47.95 c.37.1.1 84401 2qu8A 228 48.11 2og2A 359 49.46 1jf2A 195 50.29 a.39.1.5 62930 2gzaA 361 51.08 1mkyA 439 52.33 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1sgwA 214 52.80 c.37.1.12 105541 2qy9A 309 52.93 1ur1A 378 53.32 c.1.8.3 99804 1g7sA 594 55.40 b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1h8eA 510 55.89 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1of1A 376 56.83 c.37.1.1 103924 1oxxK 353 57.72 b.40.6.3,c.37.1.12 93715,93716 1v0lA 313 58.47 c.1.8.3 108207 2ixeA 271 58.85 1bg2A 325 60.87 c.37.1.9 32189 1z47A 355 62.67 1p1jA 533 63.59 c.2.1.3,d.81.1.3 87687,87688 1cr1A 296 63.71 c.37.1.11 32286 2bbsA 290 65.29 1m5wA 243 66.30 c.1.24.1 84836 2gk6A 624 66.35 2vhjA 331 66.83 1j1yA 136 69.66 d.38.1.5 90776 2i1qA 322 71.36 a.60.4.1,c.37.1.11 136984,136985 1fviA 297 72.23 b.40.4.6,d.142.2.1 25364,41578 1tcaA 317 72.53 c.69.1.17 34726 2ff7A 247 72.78 c.37.1.12 133377 1qdeA 224 74.24 c.37.1.19 32410 1r2rA 248 75.60 c.1.1.1 96875 1js3A 486 75.71 c.67.1.6 67215 1nn5A 215 76.86 c.37.1.1 85892 2csuA 457 77.20 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1t3lA 337 77.48 b.34.2.1,c.37.1.1 106358,106359 1t6nA 220 81.30 c.37.1.19 106576 1ub0A 258 81.75 c.72.1.2 88394 1nnfA 309 82.18 c.94.1.1 85903 3b6uA 372 84.13 2z43A 324 85.91 2bfdA 400 86.68 1eyeA 280 87.35 c.1.21.1 29672 1xmiA 291 88.10 c.37.1.12 115489 1j5xA 342 88.91 c.80.1.1 71591