# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 6.68e-25 1xwiA 322 1.71e-23 1lv7A 257 8.96e-21 c.37.1.20 78232 2c9oA 456 1.12e-16 1nsf 273 1.50e-16 1in4A 334 4.87e-16 a.4.5.11,c.37.1.20 62597,62598 2z4sA 440 5.58e-16 1in6A 334 5.97e-16 a.4.5.11,c.37.1.20 62601,62602 1d2nA 272 7.22e-16 c.37.1.20 32428 1w5tA 412 5.07e-14 a.4.5.11,c.37.1.20 114255,114256 1gvnB 287 7.38e-14 c.37.1.21 76354 1u0jA 267 7.78e-13 c.37.1.20 107546 2p5tB 253 1.22e-11 1lw7A 365 2.01e-11 c.26.1.3,c.37.1.1 74295,74296 1sxjE 354 3.02e-11 a.80.1.1,c.37.1.20 106089,106090 1fnnA 389 4.28e-11 a.4.5.11,c.37.1.20 16129,32426 1a5t 334 4.76e-11 2gxaA 274 2.56e-10 1jbkA 195 1.98e-09 c.37.1.20 71631 3bosA 242 7.02e-08 1sxjA 511 1.33e-07 a.80.1.1,c.37.1.20 106081,106082 1svmA 377 1.50e-07 c.37.1.20 112126 1rkbA 173 2.38e-07 c.37.1.1 111854 1tueA 212 3.22e-07 c.37.1.20 107323 2p65A 187 2.61e-06 2dvwB 83 3.73e-06 2qgzA 308 3.76e-06 1sxjC 340 5.73e-06 a.80.1.1,c.37.1.20 106085,106086 1u94A 356 7.15e-06 c.37.1.11,d.48.1.1 107743,107744 2chgA 226 2.14e-05 1njgA 250 2.89e-05 c.37.1.20 85785 1viaA 175 4.84e-05 c.37.1.2 100754 1ny6A 267 5.53e-05 c.37.1.20 92321 2ak3A 226 0.000147 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.000415 c.37.1.2 59296 2bjvA 265 0.000513 1p3jA 217 0.001188 c.37.1.1,g.41.2.1 94022,94023 1a5tA 334 0.001518 a.80.1.1,c.37.1.20 18450,32423 1g8pA 350 0.003280 c.37.1.20 60376 2dznB 82 0.003345 2r44A 331 0.005070 2reb 352 0.006485 1qhxA 178 0.01275 c.37.1.3 31936 1zd8A 227 0.01462 1n25A 368 0.01605 c.37.1.20 85264 1zin 217 0.01822 1e4yA 214 0.01982 c.37.1.1,g.41.2.1 31901,45181 2fnaA 357 0.02288 a.4.5.11,c.37.1.20 133809,133810 2gnoA 305 0.02294 a.80.1.1,c.37.1.20 135414,135415 1ltqA 301 0.02862 c.108.1.9,c.37.1.1 78208,78209 1ukz 203 0.03139 1g41A 444 0.04353 c.37.1.20 32450 2r2aA 199 0.06338 1qf9A 194 0.09329 c.37.1.1 31848 3co5A 143 0.1224 1ly1A 181 0.1903 c.37.1.1 74334 1knqA 175 0.2850 c.37.1.17 72786 2eu8A 216 0.3891 2axpA 173 0.4765 c.37.1.1 127497 1kdoA 227 0.5109 c.37.1.1 68478 2cdnA 201 0.5413 c.37.1.1 130289 2g1kA 176 0.7336 c.37.1.2 134519 2ga8A 359 0.7773 1oe0A 230 0.8540 c.37.1.1 92788 2iyvA 184 0.9703 c.37.1.2 137812 1xp8A 366 1.162 c.37.1.11,d.48.1.1 115735,115736 1n3bA 216 1.199 c.37.1.1 79959 2cvhA 220 1.454 3tmkA 216 1.463 c.37.1.1 31920 3be4A 217 1.469 1akyA 220 1.484 c.37.1.1,g.41.2.1 31896,45197 2c95A 196 1.530 2bdtA 189 1.656 c.37.1.25 128344 1ak2A 233 1.662 c.37.1.1,g.41.2.1 31894,45195 1uj2A 252 1.675 c.37.1.6 99452 1zuhA 168 1.721 2grjA 192 1.777 1kagA 173 2.213 c.37.1.2 72249 2pt5A 168 2.706 1m7gA 211 2.816 c.37.1.4 78724 1g6oA 330 3.032 c.37.1.11 32430 1zinA 217 3.094 c.37.1.1,g.41.2.1 31915,45178 2ze7A 253 3.235 1p5zB 263 3.537 c.37.1.1 87815 1nlfA 279 3.587 c.37.1.11 85850 1ckeA 227 4.044 c.37.1.1 31846 2eyuA 261 4.113 1y63A 184 4.161 c.37.1.1 116494 2rgxA 206 4.439 2yvuA 186 5.035 2bwjA 199 5.111 3bh0A 315 5.653 1ukzA 203 6.042 c.37.1.1 31840 2qgnA 322 6.082 1ex7A 186 6.159 c.37.1.1 59537 2rhmA 193 6.961 1u9iA 519 7.443 c.37.1.11,c.37.1.11 119637,119638 1jjvA 206 9.062 c.37.1.1 71698 2pjzA 263 10.04 2rebA 352 11.07 c.37.1.11,d.48.1.1 32282,38767 1z6gA 218 11.34 1z8fA 228 11.57 2ax4A 198 12.73 1g8yA 279 13.01 c.37.1.11 32302 3bs4A 260 13.43 2dr3A 247 14.24 1ub0A 258 14.29 c.72.1.2 88394 1n0wA 243 14.31 c.37.1.11 79772 2hehA 387 15.61 4tmkA 213 15.73 c.37.1.1 31930 1nrjB 218 18.44 c.37.1.8 86125 1xrjA 261 20.05 c.37.1.6 122256 2qi9C 249 20.19 1s4qA 228 21.07 c.37.1.1 98507 2oap1 511 21.29 2f6rA 281 21.57 1ry6A 360 24.12 c.37.1.9 98090 1esmA 316 24.38 c.37.1.6 31953 2d2eA 250 24.42 1ye8A 178 24.51 c.37.1.11 123010 1w44A 331 24.90 c.37.1.11 114147 1w36D 608 25.17 c.37.1.19,c.37.1.19 114128,114129 2pbrA 195 26.71 1sq5A 308 27.48 c.37.1.6 105882 2qorA 204 28.06 2gdjA 264 30.35 c.37.1.11 135018 3bfnA 379 30.60 1vhtA 218 30.67 c.37.1.1 100700 1bif 469 31.62 2qy9A 309 33.04 1bifA 469 33.37 c.37.1.7,c.60.1.4 31961,34003 1e9rA 437 34.01 c.37.1.11 64827 2og2A 359 34.51 2a5yB 549 34.84 2plrA 213 34.95 1kgdA 180 35.68 c.37.1.1 68582 1r0wA 286 37.44 c.37.1.12 96754 1j1yA 136 37.73 d.38.1.5 90776 1dekA 241 39.24 c.37.1.1 31842 1wluA 136 39.85 d.38.1.5 121015 2nq2C 253 40.64 1jx2B 315 40.74 c.37.1.8 67404 1x88A 359 42.95 c.37.1.9 121797 2e87A 357 44.09 2ccjA 205 44.59 1knxA 312 44.76 c.98.2.1,c.91.1.2 77459,77460 3c8uA 208 46.01 1v5wA 343 47.38 c.37.1.11 108387 2pezA 179 50.03 1e2kA 331 51.09 c.37.1.1 31854 2ondA 308 51.27 1nijA 318 53.26 c.37.1.10,d.237.1.1 85741,85742 1ki9A 192 54.67 c.37.1.1 84404 1j5xA 342 55.03 c.80.1.1 71591 3b85A 208 56.05 1khtA 192 56.78 c.37.1.1 84401 2pmkA 243 57.62 2gk6A 624 58.22 2oblA 347 58.49 3b9qA 302 58.53 1vplA 256 58.73 c.37.1.12 113966 2ff7A 247 62.89 c.37.1.12 133377 2ixeA 271 63.62 1p6xA 334 63.93 c.37.1.1 94195 1eyeA 280 66.78 c.1.21.1 29672 1jakA 512 67.19 c.1.8.6,d.92.2.1 66472,66473 1i45A 248 67.20 c.1.1.1 61665 2pzeA 229 68.26 2z0hA 197 69.42 1p1jA 533 69.51 c.2.1.3,d.81.1.3 87687,87688 1ho1A 242 69.59 c.1.24.1 61097 2qt1A 207 70.57 2cbzA 237 71.69 1tph1 247 72.16 1r2rA 248 78.59 c.1.1.1 96875 2j7yA 255 79.19 a.123.1.1 138130 1ls1A 295 79.42 a.24.13.1,c.37.1.10 78170,78171 2it1A 362 80.01 1q0bA 367 81.15 c.37.1.9 95502 1wkyA 464 81.21 b.18.1.31,c.1.8.3 120992,120993 1o5xA 248 85.63 c.1.1.1 92528 1pujA 282 85.88 c.37.1.8 88294 1neyA 247 86.00 c.1.1.1 80449 1ji0A 240 87.27 c.37.1.12 71665 1l5oA 356 89.58 c.39.1.1 77711 2h58A 330 89.74