# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9pA 297 1.24e-25 1xwiA 322 2.21e-24 1lv7A 257 6.33e-21 c.37.1.20 78232 2c9oA 456 5.89e-19 1nsf 273 1.69e-17 2z4sA 440 1.23e-16 1d2nA 272 2.23e-16 c.37.1.20 32428 1gvnB 287 3.24e-16 c.37.1.21 76354 1in4A 334 4.20e-16 a.4.5.11,c.37.1.20 62597,62598 1in6A 334 4.93e-16 a.4.5.11,c.37.1.20 62601,62602 1u0jA 267 1.06e-14 c.37.1.20 107546 1w5tA 412 1.87e-14 a.4.5.11,c.37.1.20 114255,114256 2p5tB 253 1.85e-13 1lw7A 365 1.18e-12 c.26.1.3,c.37.1.1 74295,74296 1fnnA 389 1.14e-11 a.4.5.11,c.37.1.20 16129,32426 1a5t 334 5.89e-11 1sxjE 354 1.13e-10 a.80.1.1,c.37.1.20 106089,106090 2gxaA 274 1.69e-10 1svmA 377 1.25e-09 c.37.1.20 112126 1jbkA 195 3.71e-09 c.37.1.20 71631 1rkbA 173 6.48e-09 c.37.1.1 111854 1tueA 212 1.15e-08 c.37.1.20 107323 3bosA 242 4.16e-08 1sxjA 511 6.30e-08 a.80.1.1,c.37.1.20 106081,106082 1u94A 356 1.74e-06 c.37.1.11,d.48.1.1 107743,107744 2qgzA 308 1.97e-06 1viaA 175 4.15e-06 c.37.1.2 100754 2p65A 187 4.15e-06 2dvwB 83 5.88e-06 1ny6A 267 1.06e-05 c.37.1.20 92321 2ak3A 226 1.09e-05 c.37.1.1,g.41.2.1 31892,45193 1sxjC 340 1.23e-05 a.80.1.1,c.37.1.20 106085,106086 1e6cA 173 3.52e-05 c.37.1.2 59296 1g8pA 350 0.000134 c.37.1.20 60376 2bjvA 265 0.000155 1njgA 250 0.000321 c.37.1.20 85785 2chgA 226 0.000380 1p3jA 217 0.000402 c.37.1.1,g.41.2.1 94022,94023 2r44A 331 0.001498 1zd8A 227 0.002243 2dznB 82 0.003270 1a5tA 334 0.004216 a.80.1.1,c.37.1.20 18450,32423 1ukz 203 0.006274 2reb 352 0.006876 1qhxA 178 0.007397 c.37.1.3 31936 2gnoA 305 0.008342 a.80.1.1,c.37.1.20 135414,135415 1zin 217 0.01074 1ltqA 301 0.01808 c.108.1.9,c.37.1.1 78208,78209 3co5A 143 0.02484 1oe0A 230 0.02945 c.37.1.1 92788 1n25A 368 0.03168 c.37.1.20 85264 1e4yA 214 0.03513 c.37.1.1,g.41.2.1 31901,45181 1ly1A 181 0.05799 c.37.1.1 74334 2r2aA 199 0.05988 1qf9A 194 0.07668 c.37.1.1 31848 1g41A 444 0.1089 c.37.1.20 32450 1knqA 175 0.1415 c.37.1.17 72786 2fnaA 357 0.1615 a.4.5.11,c.37.1.20 133809,133810 2g1kA 176 0.2665 c.37.1.2 134519 1zuhA 168 0.3326 1uj2A 252 0.3373 c.37.1.6 99452 2grjA 192 0.3620 2axpA 173 0.4100 c.37.1.1 127497 1n3bA 216 0.4175 c.37.1.1 79959 2cdnA 201 0.4413 c.37.1.1 130289 3tmkA 216 0.4484 c.37.1.1 31920 2eu8A 216 0.4705 2ga8A 359 0.4813 2iyvA 184 0.5618 c.37.1.2 137812 2c95A 196 0.7904 2bdtA 189 0.9295 c.37.1.25 128344 1xp8A 366 1.114 c.37.1.11,d.48.1.1 115735,115736 2cvhA 220 1.457 1m7gA 211 1.463 c.37.1.4 78724 1akyA 220 1.507 c.37.1.1,g.41.2.1 31896,45197 1jjvA 206 1.669 c.37.1.1 71698 2rhmA 193 1.723 2bwjA 199 1.832 1p5zB 263 2.148 c.37.1.1 87815 2pt5A 168 2.481 2ax4A 198 2.547 2ze7A 253 2.854 1kdoA 227 3.253 c.37.1.1 68478 2rgxA 206 3.385 1zinA 217 3.746 c.37.1.1,g.41.2.1 31915,45178 1kagA 173 4.404 c.37.1.2 72249 2yvuA 186 4.666 1ex7A 186 4.789 c.37.1.1 59537 4tmkA 213 5.901 c.37.1.1 31930 2ccjA 205 6.051 1g6oA 330 6.284 c.37.1.11 32430 1ukzA 203 6.379 c.37.1.1 31840 3c8uA 208 6.449 1nlfA 279 6.661 c.37.1.11 85850 1ak2A 233 7.149 c.37.1.1,g.41.2.1 31894,45195 2eyuA 261 7.971 1s4qA 228 8.173 c.37.1.1 98507 1z6gA 218 8.770 1y63A 184 9.659 c.37.1.1 116494 3bh0A 315 10.08 1u9iA 519 11.20 c.37.1.11,c.37.1.11 119637,119638 1kgdA 180 13.23 c.37.1.1 68582 2plrA 213 13.43 1n0wA 243 15.98 c.37.1.11 79772 2z0hA 197 17.22 1g8yA 279 17.40 c.37.1.11 32302 3bs4A 260 17.54 1ki9A 192 17.75 c.37.1.1 84404 1dekA 241 18.46 c.37.1.1 31842 1z8fA 228 18.57 1nijA 318 19.67 c.37.1.10,d.237.1.1 85741,85742 2pbrA 195 20.50 2oap1 511 20.68 3be4A 217 20.73 2f6rA 281 22.94 1v5wA 343 23.02 c.37.1.11 108387 2qi9C 249 23.10 1d6jA 211 25.07 c.37.1.4 31940 2hehA 387 25.43 2dr3A 247 26.62 1ckeA 227 27.37 c.37.1.1 31846 1nksA 194 28.93 c.37.1.1 31886 1w44A 331 30.51 c.37.1.11 114147 1nrjB 218 30.66 c.37.1.8 86125 2hjgA 436 31.14 1p6xA 334 34.25 c.37.1.1 94195 2vp4A 230 36.00 1znwA 207 37.24 c.37.1.1 125412 1jakA 512 38.28 c.1.8.6,d.92.2.1 66472,66473 1x6vA 630 39.30 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1e2kA 331 39.52 c.37.1.1 31854 2pezA 179 40.80 2gdjA 264 40.96 c.37.1.11 135018 1us6A 102 43.25 a.2.13.1 107999 2ijrA 300 46.78 2e87A 357 47.96 1rfyA 102 49.88 a.2.13.1 111798 1xx6A 191 50.81 c.37.1.24,g.39.1.14 116139,116140 2qorA 204 51.44 3bfnA 379 51.53 1g7sA 594 52.23 b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2qu8A 228 54.49 2qgnA 322 56.38 3b85A 208 56.46 2pjzA 263 56.60 1esmA 316 57.74 c.37.1.6 31953 1khtA 192 59.11 c.37.1.1 84401 1ho1A 242 59.47 c.1.24.1 61097 2nq2C 253 61.16 1ur1A 378 62.59 c.1.8.3 99804 1m5wA 243 63.83 c.1.24.1 84836 2d2eA 250 65.90 1vmaA 306 66.60 a.24.13.1,c.37.1.10 108887,108888 2qy9A 309 68.74 1of1A 376 71.05 c.37.1.1 103924 1ye8A 178 73.91 c.37.1.11 123010 1zu4A 320 75.71 2rebA 352 76.97 c.37.1.11,d.48.1.1 32282,38767 1rwyA 109 77.86 a.39.1.4 98002 3b9qA 302 79.27 1jx2B 315 79.60 c.37.1.8 67404 2ew1A 201 80.60 c.37.1.8 132446 2gzaA 361 80.73 1h8eA 510 81.55 a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 3b6uA 372 82.49 1nnfA 309 83.11 c.94.1.1 85903 1ohvA 472 83.36 c.67.1.4 93031 1v0lA 313 85.64 c.1.8.3 108207 1r0wA 286 86.68 c.37.1.12 96754 1bifA 469 86.79 c.37.1.7,c.60.1.4 31961,34003 1lluA 342 89.00 b.35.1.2,c.2.1.1 91064,91065