T0422.best_hits

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
1e32A	458	5.3912e-48	1e32A	b.52.2.3
				d.31.1.1
				c.37.1.20
3b9pA	297	6.1430e-34
1xwiA	322	1.6894e-33
1lv7A	257	5.5038e-32		c.37.1.20
3cf2A	806	7.7824e-29
1r7rA	816	7.7824e-29		c.37.1.20
				b.52.2.3
				c.37.1.20
				d.31.1.1
3cf0A	301	3.5101e-27
2rkoA	331	1.2519e-25
2qp9X	355	2.3244e-25
2dhrA	499	2.2409e-23
2ce7A	476	2.8111e-23		c.37.1.20
				a.269.1.1
1iy2A	278	3.7091e-23		c.37.1.20
1ixzA	254	3.7333e-23		c.37.1.20
1ofhA	310	6.6451e-22		c.37.1.20
1nsf	248	1.0440e-20	1d2nA
2qz4A	262	3.0372e-20
1sxjA	516	8.0731e-20		c.37.1.20
				a.80.1.1
1in6A	334	2.4940e-19	1hqcA	a.4.5.11
				c.37.1.20
1do0A	442	3.3596e-19	1do0A	c.37.1.20
1in4A	334	1.3060e-18	1hqcA	c.37.1.20
				a.4.5.11
1g41A	444	1.3120e-18	1do0A	c.37.1.20
1l8qA	324	3.7055e-18		c.37.1.20
				a.4.12.2
1sxjC	340	2.1631e-17		c.37.1.20
				a.80.1.1
1um8A	376	1.6315e-16		c.37.1.20
1d2nA	272	5.2434e-16	1d2nA	c.37.1.20
1iqpA	327	6.5393e-16		c.37.1.20
				a.80.1.1
2rhmA	193	2.2468e-15
1gvnB	287	8.0764e-15		c.37.1.21
2chgA	226	8.5158e-15
1hqcA	324	1.5104e-14	1hqcA	a.4.5.11
				c.37.1.20
2z4sA	440	2.3181e-13
2c9oA	456	2.6011e-13
1jr3A	373	6.3882e-13		c.37.1.20
				a.80.1.1
1njgA	250	4.9805e-11		c.37.1.20
1jbkA	195	2.2507e-10		c.37.1.20
1rkbA	173	5.4438e-09		c.37.1.1
1ny6A	267	8.3863e-09		c.37.1.20
1y63A	184	6.8619e-08		c.37.1.1
2p65A	187	1.3971e-07
2qgzA	308	1.8427e-07
1fnnA	389	4.8829e-07	1fnnA	c.37.1.20
				a.4.5.11
2fnaA	357	6.3816e-07		c.37.1.20
				a.4.5.11
1g8pA	350	6.5657e-07	1g8pA	c.37.1.20
1in5A	334	8.4543e-07	1hqcA	c.37.1.20
				a.4.5.11
1sxjE	354	9.5657e-07		c.37.1.20
				a.80.1.1
1kagA	173	1.0378e-06		c.37.1.2
1in8A	334	1.0703e-06	1hqcA	a.4.5.11
				c.37.1.20
1j7kA	334	1.1141e-06	1hqcA	a.4.5.11
				c.37.1.20
1in7A	334	1.3254e-06	1hqcA	a.4.5.11
				c.37.1.20
2p5tB	253	3.0250e-06
2dvwB	83	3.2884e-06
1ixrC	312	3.7431e-06		c.37.1.20
				a.4.5.11
1ixsB	318	3.7508e-06		c.37.1.20
				a.4.5.11
1nsfA	273	4.8949e-06		c.37.1.20
3bosA	242	1.8193e-05
1r6bX	758	3.0217e-05		c.37.1.20
				a.174.1.1
				c.37.1.20
1viaA	175	4.1325e-05		c.37.1.2
2bjvA	265	5.2161e-05
1g19A	350	9.5771e-05	2reb	c.37.1.11
				d.48.1.1
2chqA	319	9.7244e-05
1n25A	368	1.2271e-04		c.37.1.20
1qvrA	854	3.0710e-04		a.174.1.1
				c.37.1.20
				c.37.1.20
2qbyA	386	1.3461e-03
2hcbA	323	2.6529e-03		c.37.1.20
				a.4.12.2

Please cite the following papers:

Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.